PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26382.1 Da PI: 9.8315 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEde+l+ +++ G g+W++ ++ g+ R++k+c++rw +yl evm.model.supercontig_6.280 14 KGAWSREEDERLIAYIQANGQGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+el+++++++lG++ W+ Ia +++ gRt++++k++w+++ evm.model.supercontig_6.280 67 RGNFTPEEEELIIKLHRLLGNK-WSIIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.245 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.743 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-28 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRSPCCEKG HPNKGAWSRE EDERLIAYIQ ANGQGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TPEEEELIIK LHRLLGNKWS IIAGRLPGRT DNEIKNYWNT HIRRKLLTRG 120 VDPSTHQPIN KAGNLRRTKQ GDEEAEEKII CNGGFGIQNQ KNTDREKCHQ ELNLELRISL 180 PTNPVVTQPF EKRGRQKVLC FYCSLGLPNN KECSCSSSEG GRNGALDYRK L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908231.1 | 1e-170 | myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-93 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2K2AF67 | 1e-108 | A0A2K2AF67_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_6.280 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-92 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.280 |
Publications ? help Back to Top | |||
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