PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.213
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 1074aa    MW: 118642 Da    PI: 5.8732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.213genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-0610501073226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                   +++ C+ f+++G+Ck+G++C++ H+
  evm.model.supercontig_6.213 1050 GQRVCK-FYESGYCKRGASCSYWHP 1073
                                   6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.43E-8103172IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-8124174IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.0038130175IPR001965Zinc finger, PHD-type
CDDcd155685.52E-16130172No hitNo description
SuperFamilySSF475922.83E-19323401IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.6E-23324406IPR003121SWIB/MDM2 domain
PfamPF022019.1E-15335400IPR003121SWIB/MDM2 domain
SMARTSM001510.0016344405IPR019835SWIB domain
SMARTSM007191.4E-50461571IPR004343Plus-3 domain
PROSITE profilePS5136028.372461594IPR004343Plus-3 domain
SuperFamilySSF1590423.4E-33462591IPR004343Plus-3 domain
PfamPF031261.0E-24466569IPR004343Plus-3 domain
PROSITE profilePS5010314.45510481073IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-610481072IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-410501073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-410521072IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MEQQHQQQEL ENKQEVEPAS GLYKPRLQEE SSVLEVDAMS IDQCETIREM DDSQLVGAPA  60
AANAGVTKTP GRGGGCLVDV EVKLKQEGET GPGVVETITG KRRRGRPPRG HPKTTPPPAP  120
PPRKKDEEDV CFICFDGGSL VLCDRRGCPK AYHPACIKRD DAFFRSKAKW NCGCVKDADY  180
LGVRGNKGFC GTCMRTIMLI ENAGQKDNET VQVDFDDTSS WEYLFKVYWL YLKGKLSLTL  240
EELTKAKNPW KGTAIMAPRV QYFSDPYGHN DHRGSCSDNT CADLIANHDK RRKTQIPTNL  300
NKMDSLSTED SGGDKGMDFP EDTKWATSEL LDFVAHVNNG NTSVLSKYDV QNLFLEYVKI  360
NNLRDPNQKC QIICDAKLAR LFGKERVGHF EMLKLIENHV LIPENSPAAN TDKVGVTGAV  420
PCQVEADGNN YIPVMGNDRK RKMRKRVDER GPLVNPHDYA AIDVHNINLI YLRRTLVENL  480
IDDEKKFHEK VVGSIVRIRI SGSDQKQDIY RLVQVVGTSK VAEPYKIGSR TTDVMLQILN  540
LDKKEVISID EISNQEFSED ECRRLRQSIK CGLIKRLTVG EIREKAVALQ AVKVNDWLEA  600
EILRLNHLRD RANEKGLRKE YPLIFTVFCL ECVEKLELLN SPEERERRLL DIPEVHCDLK  660
MNPSYESEDE LDGKKKGNHM RARGPDFSKK ENTPVSSRRG DSGISWSTAS SLVGGGTQIR  720
EVAGEWSTYS STPAKPSVEE WDPSLVAGSL KPPKVAVEHV ATPTSGCAQV THSSPPHPTS  780
NASDWPTIMT EANDCDESVS DLLAEVEAME SLNGLPSPTS ILRELTQGSD DDCFSPVEGL  840
SPAPDLGKND ALSSTNDFQM PSQSNVKDEP LVLSHINFLD RQKVSGGLSI TNSEVEEDKK  900
PIDLSINQCE AGSDIPPPAR PVTSWEVTPS VSSAWSVGSE PSGVSWSAVQ GNPNLSWAAL  960
VQATTNMSWE TGQGTTAQEN ASMSSGNATG NPAPWGSQLR YSSDRSSGSR DRDFLGRDSN  1020
FGKGRSLWNN RQSSYGAHGT GSVSKPPPKG QRVCKFYESG YCKRGASCSY WHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908304.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A1Q3C6L80.0A0A1Q3C6L8_CEPFO; SWIB domain-containing protein/GYF domain-containing protein/Plus-3 domain-containing protein
STRINGevm.model.supercontig_6.2130.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding