PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 36802 Da PI: 5.7334 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.5e-18 | 257 | 291 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l evm.model.supercontig_6.206 257 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 291 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.3E-89 | 1 | 333 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.4E-16 | 251 | 305 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.057 | 251 | 287 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.04E-14 | 252 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 255 | 289 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.43E-14 | 256 | 304 | No hit | No description |
Pfam | PF00320 | 1.9E-16 | 257 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 257 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MECIEAALKS SFRREMAMKT SPQAFFDDDT PNGLSCEDFF VDDLLDLSNG DGFVEKEAGK 60 EEEEDDEGKV SAGCVEGQEG LKQSLGFSSG DDFGFVDATE LAVPSDDLAD LEWLSHFVED 120 SFSEYSVAYP TGALPEKPKW QTPSCHAQLA PSFAEKPCFK TPIPAKARSK RTRTGGRVWS 180 LGSLSLTESS SSSTSSTSSS PSNSSPWLIG INPVWRPSLD QPAEPVSWEK PPAKKAKKKS 240 GTDSAAPNGG SQPPRRCSHC GVQKTPQWRT GPLGAKTLCN ACGVRYKSGR LLPEYRPACS 300 PTFSSELHSN HHRKVLEMRR KKESSQPEPG LVSSPLTSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907860.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 4e-87 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | M5WGI3 | 1e-118 | M5WGI3_PRUPE; GATA transcription factor | ||||
STRING | evm.model.supercontig_6.206 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 6e-83 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.206 |