PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.175

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 169aa MW: 18488.7 Da PI: 5.2319

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.175	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.6e-12	31	73	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++ +r+q+NRe+ArrsR RK++ ++ L v +L++eN + evm.model.supercontig_6.175 31 RKRKRMQSNRESARRSRMRKQKHLDDLMAQVSQLSKENNQILT 73 6789**********************************87654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-17	27	91	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	29	92	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-11	30	106	No hit	No description
SuperFamily	SSF57959	9.14E-12	31	81	No hit	No description
Pfam	PF00170	3.0E-10	31	71	IPR004827	Basic-leucine zipper domain
CDD	cd14702	4.10E-18	32	83	No hit	No description
PROSITE pattern	PS00036	0	34	49	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MACSSTGASS GSSALRSSSS EEDLQQIMDQ RKRKRMQSNR ESARRSRMRK QKHLDDLMAQ 60 VSQLSKENNQ ILTSMTITSQ LYSTIEAENS VLRAQVTELS HRLQSLNEIV DLVSSGCNGA 120 GSAGVVGGHE MFDQISGDDG FMAMMMNPWE DSLFVNQPIM AATDYVLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	51	RKRKRMQSNRESARRSRMRKQK
2	43	50	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.175

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907836.1	1e-121	bZIP transcription factor 2-like
Swissprot	C0Z2L5	5e-50	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A0J8FKP2	2e-53	A0A0J8FKP2_BETVU; Uncharacterized protein
STRING	evm.model.supercontig_6.175	1e-120	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154
Representative plant	OGRP551	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18160.1	3e-50	basic leucine-zipper 2

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.175

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]