PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 20588.1 Da PI: 10.0882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.2e-08 | 114 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +l+ +a + + ++ +W +a+ +g g++++++k ++ k+ evm.model.supercontig_6.124 114 SWTPKQNKLFERALAVYDKDtpdRWINVAKAVG-GKSAEEVKKHYEKL 160 7********************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.482 | 110 | 165 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-7 | 111 | 163 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 113 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 114 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-4 | 114 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-6 | 115 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSLERGLNSL SGIYSKSHGS GPHASERINN SYFSCSNLIH RFHLQKLTGL GKNNPKRLII 60 DIKMRRCSNK QGHANVDYEN ENNQLYLEIF QSKGTAATLM ASNSLTSSRS SSSSWTPKQN 120 KLFERALAVY DKDTPDRWIN VAKAVGGKSA EEVKKHYEKL IRDVKDIESG RYPYPSYGSS 180 GNGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-31 | 105 | 184 | 1 | 80 | RADIALIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.124 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | evm.model.supercontig_6.124 | 1e-134 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-25 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.124 |