PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_594.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 374aa    MW: 42668.8 Da    PI: 7.0779
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_594.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.21.3e-56171441129
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhPtdee++++yL++kv ++++++  +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat++gy
  evm.model.supercontig_594.1  17 LPPGFRFHPTDEEIITHYLTHKVVNSNFTA-FAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATEAGY 97 
                                  79*************************999.56***************99999***************************** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                  Wkatgkdke+++ kg lvg+kktLvfy+grapkgekt+Wvmheyrle
  evm.model.supercontig_594.1  98 WKATGKDKEIYRGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 144
                                  ************9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6413169IPR003441NAC domain
PROSITE profilePS5100559.98117168IPR003441NAC domain
PfamPF023651.9E-2918143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDDQETVVNK GDDLMDLPPG FRFHPTDEEI ITHYLTHKVV NSNFTAFAIG EADLNKSEPW  60
DLPKKAKMGE KEWYFFCQKD RKYPTGMRTN RATEAGYWKA TGKDKEIYRG KGCLVGMKKT  120
LVFYRGRAPK GEKTNWVMHE YRLEGKFSYY NLPRSAKDEW VVCRVFHKNT CIKKTPLTPD  180
HHLLRMNSFG DHHLDQFMDC PSSLPPLMEP TFSPSPLLPA TDQNEFKTSM NAPARSSDGN  240
YPFSHANMIN NSNNYIPQSQ ISANIFNPQN QANFSFQTSH FNPGYNRTST CGAIPSVSRS  300
GFESNEMIFR ALAARNEEPK LERQCKMEQF SSNQSMVSQE TGVSATEISS VVSKQENKSN  360
YDDIADLDCL WDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-531517415171NO APICAL MERISTEM PROTEIN
1ut4_B7e-531517415171NO APICAL MERISTEM PROTEIN
1ut7_A7e-531517415171NO APICAL MERISTEM PROTEIN
1ut7_B7e-531517415171NO APICAL MERISTEM PROTEIN
4dul_A7e-531517415171NAC domain-containing protein 19
4dul_B7e-531517415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904869.10.0NAC domain-containing protein 79-like
SwissprotQ9FK441e-111NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A061F1191e-158A0A061F119_THECC; NAC domain protein, IPR003441, putative
STRINGevm.model.supercontig_594.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-113Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]