PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_57.21
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 491aa    MW: 53118.5 Da    PI: 7.2774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_57.21genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY985.9e-31245303259
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  evm.model.supercontig_57.21 245 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 303
                                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33229305IPR003657WRKY domain
SuperFamilySSF1182903.4E-28237305IPR003657WRKY domain
PROSITE profilePS5081129.723239305IPR003657WRKY domain
SMARTSM007741.6E-37244304IPR003657WRKY domain
PfamPF031064.3E-27246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDNNQLERRE FTFLHSSGDF LGQISGVPDD HKRPPVKEMD FFSTSNQPPD QHTNIGSSSS  60
GVNIGLNLLT SGCRISRIEN DDRPNSELSS LQKELERLHE ENRKLRSTLD QITKKYSELQ  120
NQLVMTIQTQ GQGGRREQVL VQKGVSSPIK PGQELTEPRP LDVNEASVSD DKTQDLSNTM  180
EVVSKEREMN VVSGKQDGGD QTSQSWGSPK SPKSDQNKNE DQIPEAPFRK ARVSVRARSE  240
APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCADDKS ILITTYEGNH  300
NHPLPPAATA MASTTSAAAA MLLSGSTSTK ESLPTSAFLS SVPYASTMAT LSASAPFPTI  360
TLDLTQTPNP MHLLRSQTSF PLPLHGSPQL LGHPMFVAPH KFPAMPPLQL AQRPPSMVET  420
VTAAIASDPN FTAALAAAIS SIIGSNPRSN DANNGSNNVT DENINVTPNG VPGLPGSPQL  480
QQSCTTFSTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21231307176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_57.21
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897275.10.0probable WRKY transcription factor 47 isoform X1
SwissprotQ9ZSI71e-104WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A061DRV70.0A0A061DRV7_THECC; WRKY family transcription factor, putative
STRINGevm.model.supercontig_57.210.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-92WRKY family protein