PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_566.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 94aa MW: 10951.8 Da PI: 4.158 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.7 | 6.9e-17 | 44 | 90 | 2 | 49 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp evm.model.supercontig_566.3 44 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPG 90 79***************************.89**************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-17 | 42 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.371 | 43 | 93 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-8 | 45 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MAIAAANMSN NSSEDNNRNN NEEEGSGDHQ VVDDDDHHEQ DMVMPGFRFH PTEEELVEFY 60 LRRKVEGKRF NVELITFLDL YRYDPWELPG TYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-15 | 27 | 89 | 1 | 63 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-15 | 27 | 89 | 1 | 63 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-15 | 27 | 89 | 1 | 63 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-15 | 27 | 89 | 1 | 63 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-15 | 27 | 89 | 1 | 63 | NAC domain-containing protein 19 |
4dul_B | 9e-15 | 27 | 89 | 1 | 63 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_566.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905339.1 | 4e-59 | LOW QUALITY PROTEIN: NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 3e-29 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A0B2S4L3 | 9e-35 | A0A0B2S4L3_GLYSO; NAC domain-containing protein 35 | ||||
TrEMBL | I1KNQ2 | 9e-35 | I1KNQ2_SOYBN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_566.3 | 9e-64 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7967 | 13 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 4e-28 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_566.3 |
Publications ? help Back to Top | |||
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