PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_566.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 282aa    MW: 31929.7 Da    PI: 10.1732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_566.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.75.5e-07186373117
                          NAM  73 rknratksgyWk..atgkdkevlskkgelvglkktLvfykgrapkge 117
                                  r++r+ k   W+  ++g d+ + +++++ +glkktLvfy+g+apk+e
  evm.model.supercontig_566.2  18 RAKRQ-KVQKWRspKSGADRMIRTETSRPIGLKKTLVFYSGKAPKAE 63 
                                  45553.234687668999**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-52771IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNSSCFSSNC GERMVLLRAK RQKVQKWRSP KSGADRMIRT ETSRPIGLKK TLVFYSGKAP  60
KAEISLCRVY KRAGVEDHPS LPRYLSTTRA SSSRSTSFQH DKKYSNNSSH QSQKLITNTT  120
IDQIGDNVFA TTTLNVPKHS IYRPIVVPIS TSRGLSSSID AGNHEHHEVA ATMFLNQSNT  180
VVDDLHRLVN YQQSAAAASM NQFYDDHHQN HQHQHQQQQQ QQQQQQQQQQ NSQFPPLIPQ  240
TQALPITMMQ GSLAPATAFS DRLWEWNPIP EANRDYTNPF K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_566.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905339.11e-148LOW QUALITY PROTEIN: NAC domain-containing protein 35
TrEMBLA0A1Q3CB912e-54A0A1Q3CB91_CEPFO; NAM domain-containing protein
STRINGevm.model.supercontig_566.20.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-23NAC domain containing protein 35