PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_56.79
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 428aa    MW: 46195.3 Da    PI: 4.6686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_56.79genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-1761106147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  +g+W++eEd +l ++v ++G+++W++Iar +  gR++k+c++rw + 
  evm.model.supercontig_56.79  61 KGPWSPEEDAILGRLVSKFGPRNWSLIARGIS-GRSGKSCRLRWCNQ 106
                                  79******************************.***********985 PP
2Myb_DNA-binding507e-16138177647
                                  HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  evm.model.supercontig_56.79 138 DEEDHIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 177
                                  59***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.13756111IPR017930Myb domain
SuperFamilySSF466891.67E-2658174IPR009057Homeodomain-like
SMARTSM007175.1E-1460109IPR001005SANT/Myb domain
PfamPF002499.0E-1661106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2262118IPR009057Homeodomain-like
CDDcd001671.54E-1363105No hitNo description
PROSITE profilePS5129420.253131182IPR017930Myb domain
SMARTSM007178.2E-9135180IPR001005SANT/Myb domain
PfamPF002495.6E-13138177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-18138179IPR009057Homeodomain-like
CDDcd001674.74E-10138178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEDREEEEMT GVEAETEETM AAEVGQGCAE GGDGAGGSGD DSTAVAGEEG DGGKLDKDRV  60
KGPWSPEEDA ILGRLVSKFG PRNWSLIARG ISGRSGKSCR LRWCNQLDPA VKRKPFTDFI  120
VLSSECWKCG GVMLKRQDEE DHIIVAAHAI HGNKWAAIAR LLPGRTDNAI KNHWNSTLRR  180
RCMDLDMMKT NSGNMLEDAS LDKNKASSEE TLSCGDISSL RSLEGKDASS AEVFDEEYEN  240
QELTDGPSLQ EVKEPTTLFH PVARVSAFNV YNSIEGSEAA SPDPRPVPMR GPIVQSSNPA  300
VGICKLLEGA YGDQLVPQHC SHGCCVAQSG MYRQDSLLGP EFVDYLDSPS FPNELAAIAT  360
DISKHAWLKS GLNSCTTGVV DDATGNTMPH DSQVHLRHLK ENKVNGLFHA DQGKNNLTGT  420
IDNAFST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-36601813104C-Myb DNA-Binding Domain
1msf_C2e-36601813104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_56.79
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897403.10.0transcription factor MYB1
TrEMBLA0A067JNW71e-159A0A067JNW7_JATCU; MYB family protein
STRINGevm.model.supercontig_56.790.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-105myb domain protein 1