PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_56.56
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 479aa    MW: 52028.2 Da    PI: 7.09
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_56.56genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.5e-082883182454
                                  S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                     Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                  yp+ +++  LAk++gL+ +qV++WF N R +
  evm.model.supercontig_56.56 288 YPTDTDKLMLAKQTGLSRSQVSNWFINARVR 318
                                  9****************************88 PP
2BELL75.58.4e-25233287357
                         BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkai 57 
                                   e+++kk++L+s+l+eV++rYk+y++q+q+v++sFe vagl + +pY++lAlkai
  evm.model.supercontig_56.56 233 GENRRKKSRLISMLDEVYRRYKHYYQQMQAVVASFEYVAGLSNVAPYANLALKAI 287
                                  6899*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-43169299IPR006563POX domain
PfamPF075265.4E-32174287IPR006563POX domain
SMARTSM003891.9E-4237326IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-17287326IPR009057Homeodomain-like
PROSITE profilePS5007110.932288322IPR001356Homeobox domain
CDDcd000865.04E-10288323No hitNo description
SuperFamilySSF466891.46E-11288329IPR009057Homeodomain-like
PfamPF059203.1E-13288318IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAESFEPYHV PQQSRRDKLR IVAQNQTACV ENLQGCAGLL PLYDPSLLSS DHLLNAGGHD  60
FHHHVNNQLS GCKGNPVCVN VKEEVVYKPE PLSLAHESSN NNNNGRGLSL SLSSHHAHQT  120
SLPLELNIQR YGSSIYGSNK VCGGGYSMVP GSTSNDDVSR SSVPLGPFTG YASILKGSRF  180
LKPAQQLLEE FCDVGRGVYS EKITADSSLM DPPVETLSGS GINDDPLGSG DGGENRRKKS  240
RLISMLDEVY RRYKHYYQQM QAVVASFEYV AGLSNVAPYA NLALKAIYPT DTDKLMLAKQ  300
TGLSRSQVSN WFINARVRLW KPMVEEIHML ETRQAQKALQ KEDRNVNRSN DHLISGSLVS  360
ENPSCSTQRV EDTPSKRTRN ELADQVSMGS GLLNLSSYNS LSNHPSVGVS MAGGSSSVSL  420
TLGLHQNNGI GLSEPFSINA AQRFGLGLEA SNEGFVMGSF EVQNRHFGRD VIGMPASP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_56.56
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953257e-39BT095325.1 Soybean clone JCVI-FLGm-19C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897371.10.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 9
TrEMBLA0A1R3H7Z61e-146A0A1R3H7Z6_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_56.560.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-38TALE family protein