PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.70
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 331aa    MW: 36890.7 Da    PI: 4.6982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.70genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1958111356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  evm.model.supercontig_55.70  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                                  456899***********************************************9 PP
2HD-ZIP_I/II129.81.1e-4157148192
                  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y+alk + ++L++
  evm.model.supercontig_55.70  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNYDALQR 138
                                  69******************************************************************************** PP

                  HD-ZIP_I/II  83 eveeLreelk 92 
                                  ++e+L +e++
  evm.model.supercontig_55.70 139 DNEALMKEVR 148
                                  *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1943115IPR009057Homeodomain-like
PROSITE profilePS5007117.26553113IPR001356Homeobox domain
SMARTSM003893.4E-1856117IPR001356Homeobox domain
PfamPF000465.2E-1658111IPR001356Homeobox domain
CDDcd000862.24E-1658114No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2060120IPR009057Homeodomain-like
PRINTSPR000319.5E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000319.5E-693109IPR000047Helix-turn-helix motif
PfamPF021832.3E-18113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKRSLGSSDS LGALMSICPN TDEHSPRNTH VYGREFQSML EGLDEEGCLE ESGHVGEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYEALK LNYDALQRDN EALMKEVRGL KEKLNEEKTE SNLSVIKEEI ILPETDNNKT  180
LEPPPPSFSP PSPPASPLLP SAPLATTSDA TELNGVSAAS LFPTADFGSS DSDSSAILNE  240
ENNNNNNNNN NNSPNVAISL SAAGEFHHGL FISNSSSSPS CFPFSSRSTY NHTQFVKMEE  300
HNFFTGEEAC NFFSDEQAPT LQWYCAEQWN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.70
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897528.10.0homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A061DJ941e-139A0A061DJ94_THECC; Alanine--glyoxylate aminotransferase 2 isoform 1
STRINGevm.model.supercontig_55.700.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.16e-67homeobox protein 6