PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 305aa MW: 32951.7 Da PI: 5.4501 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 8.8e-18 | 248 | 281 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + evm.model.supercontig_546.1 248 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 281 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.6E-68 | 4 | 299 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.7E-16 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.583 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-13 | 243 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-15 | 246 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.64E-15 | 247 | 297 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-15 | 248 | 281 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGPNFIDEID CGSFFDHIDD LLDFPGEDIE AGLGSAADSN SLPTIWPTQS ESLPGSESVF 60 SGNSSSDLSA ELSVPYEDIL QLEWLSNFVE DSFSGGSLAM NKEESSCVTK DSSHNQFQTS 120 SPVSVLESSS SYSGDKTAPR SPDTVAVGRC GRPRSKRPRP ATFNPRPSQL ISPLSSVNEN 180 WTMQPLVADP SPKGSSDSEN VVQSRLVIKI PKQVATEHKK KKKKIKLSAP EGNSDTNQNQ 240 PSQPVRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFGQVREG 300 IGEP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_546.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905603.1 | 0.0 | LOW QUALITY PROTEIN: GATA transcription factor 8-like | ||||
TrEMBL | A0A061FV65 | 1e-137 | A0A061FV65_THECC; GATA transcription factor | ||||
STRING | evm.model.supercontig_546.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4975 | 27 | 51 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-34 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_546.1 |