PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_545.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91901.6 Da    PI: 6.3469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_545.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-182482357
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  evm.model.supercontig_545.3 24 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                                 5679*****************************************************97 PP

2START157.79.1e-501623692204
                                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEE CS
                        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetle 83 
                                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+  
  evm.model.supercontig_545.3 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFT 242
                                  7899******************************************************.7777777777***********99 PP

                                  EECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECT CS
                        START  84 vissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksn 159
                                      g  g+++l +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae lpSg+li+p+++
  evm.model.supercontig_545.3 243 MFPAGngGTIELVYTQTYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNaaaAAQFVRAEILPSGYLIRPCEG 324
                                  9999999********************************************99999998999******************** PP

                                  CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                        START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                  g+s +++v+h +l++++++++lr+l++s+ + ++k++ ++l++ +
  evm.model.supercontig_545.3 325 GGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTISALRYIR 369
                                  **************************************9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3211983IPR001356Homeobox domain
SMARTSM003893.8E-152187IPR001356Homeobox domain
SuperFamilySSF466891.88E-162286IPR009057Homeodomain-like
CDDcd000864.77E-162484No hitNo description
PfamPF000467.5E-162582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182682IPR009057Homeodomain-like
CDDcd146861.77E-676115No hitNo description
PROSITE profilePS5084827.421152380IPR002913START domain
CDDcd088752.24E-68156372No hitNo description
Gene3DG3DSA:3.30.530.206.2E-20161352IPR023393START-like domain
SuperFamilySSF559619.2E-35161373No hitNo description
SMARTSM002343.2E-41161371IPR002913START domain
PfamPF018522.9E-47162369IPR002913START domain
PfamPF086702.0E-51696839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMAVAQHRE SSSGSINKHL DNGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKEASRLQ TVNRKLTAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQQLQT ASAATDASCD SVVTTPQHSL KDATNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QSCSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELVYTQTY APTTLAPARD FWTLRYTTSL DNGSLVVCER SLSGSGAGPN  300
AAAAAQFVRA EILPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPEVLRPLY ESSKVVAQKM  360
TISALRYIRQ IAQETSGEVV YGLGRQPAVL RTFSQRLSRG FNDAINGFND DGWTIMHCDG  420
AEDVILAVNS TKNLSTSANH ANSLTYLGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD  480
FNVDAYSAAS LKAGSFAYPG MRPTRFTGSQ IIMPLGHTIE HEELLEVIRL EGHSLSQEDA  540
FVSRDIHLLQ ICSGIDENAV GACSELVFAP IDEMFPDDAP LLPSGFRIIP LDSKTSDPQD  600
TLNRHRTLDL TSSLEVGPAT NTSGDGSSCN NTRSVLTIAF QFPFESNLQE NVATMARQYV  660
RSVISSVQRV AMAISPTGLG PAVGPKLSPG SPEALTLAHW ICQSYSFHMG TELLRSDSAG  720
GDSVLKHLWH HPDAILCCSL KSLPVFIFAN QAGLDMLETT LVALQDITLD KIFDESGRKS  780
LCADFSKLMQ QGFAYLPAGI CMSTMGRHVS YEQAVAWKVL AAEENSVHCL AFSFVNWSFV  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_545.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905657.10.0homeobox-leucine zipper protein REVOLUTA
RefseqXP_021905664.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2C9V1G80.0A0A2C9V1G8_MANES; Uncharacterized protein
STRINGevm.model.supercontig_545.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]