PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_53.88 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARF | ||||||||
Protein Properties | Length: 698aa MW: 76937.5 Da PI: 6.7407 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.7e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L evm.model.supercontig_53.88 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLV 200 89****************************985444444..8999************************************* PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD++vF + +++ l+v+++r+ evm.model.supercontig_53.88 201 AGDSIVFF--RAENGDLRVGIRRA 222 ********..3488889****996 PP | |||||||
2 | Auxin_resp | 113.9 | 1.5e-37 | 283 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81 aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++Gm+fkmafetedss++++ +G v++v+ +dp++WpnS+Wr+ evm.model.supercontig_53.88 283 AATLAAKGQPFEVVYYPRASTPEFCVKASAVRAAMQIQWCPGMKFKMAFETEDSSRISWfMGAVASVQVVDPINWPNSPWRL 364 68899****************************************************************************9 PP Auxin_resp 82 Lk 83 L+ evm.model.supercontig_53.88 365 LE 366 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-30 | 109 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-37 | 114 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.57E-21 | 120 | 221 | No hit | No description |
SMART | SM01019 | 4.4E-23 | 121 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.324 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-21 | 121 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-32 | 283 | 365 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.568 | 611 | 691 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MDSIKDPMRK NSENLLDPQL WHACAGSMVQ IPPLNSKVFY FPQGHSENAH GIVDLRHVRI 60 PPLILCRVSA IKYMADTETD EVYAKIRLVP LRETGFGYIG DDHDVFDGST GVDSSDKPVS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT 180 PRRHLLTTGW SNFVNQKKLV AGDSIVFFRA ENGDLRVGIR RAKRGTGNGL EYSSGWNPVG 240 GNCSSSSGGY SGFSREDESK LMRRNCSDGD LRGRVRAESV VEAATLAAKG QPFEVVYYPR 300 ASTPEFCVKA SAVRAAMQIQ WCPGMKFKMA FETEDSSRIS WFMGAVASVQ VVDPINWPNS 360 PWRLLEVTWD EPDLLQNVKR VSPWLVELVT NIPTLHLSPF SPPRKKMRVP QHPDFSLLTQ 420 VPVPSFSSNT LRSSSPLSCI SDMIPAGIQG ARHAQYGSSF SDLYFNNLQP GLFPVDFQQQ 480 QQQQQQQQLD HAAPPSRSIN GNSVRTSKIN ESLSCSLTIG NPTSSLKENS EVKTPHFFLF 540 GKLILTQPQN CESSSGDTMG NGSLDGNLEK TTISSDGSGS ATNQIGTQEN SSDEGSPWCK 600 DDQKTDVGFE ADHCKVFMKS DDVGRNLDLS VLSSYQELYG KLANMYGMEN SEMVGAVLYR 660 DAAGCLRQTG NEPFSVFLKT ARKLMIVPDS SSDNVGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-74 | 15 | 387 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_53.88 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897845.1 | 0.0 | auxin response factor 16-like | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A061FPV2 | 0.0 | A0A061FPV2_THECC; Auxin response factor | ||||
STRING | evm.model.supercontig_53.88 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_53.88 |