PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_53.26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22829.2 Da PI: 7.0962 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe +r+da+ss+vyeA ar+rdPvyG++g i + evm.model.supercontig_53.26 52 PCAACKILRRRCVDKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQEIPECQRTDAVSSMVYEASARIRDPVYGCAGAICQ 133 7********************************************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 lq+q+++l+ +la++++e evm.model.supercontig_53.26 134 LQKQVSELQGQLAKAQAE 151 **************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.784 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-41 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLPPTNFSYS PSSSSSPPHQ SSLISFPSPS KSSPTLPPAP PSSPPPPVVL SPCAACKILR 60 RRCVDKCVLA PYFPPTEPYK FTIAHRVFGA SNIIKFLQEI PECQRTDAVS SMVYEASARI 120 RDPVYGCAGA ICQLQKQVSE LQGQLAKAQA ELVTMQCQQA NLVALICMEM RSQSQEPIFQ 180 QQQQSTYIDT TCFLDDATLG STWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 42 | 159 | 1 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 42 | 159 | 1 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_53.26 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897879.1 | 1e-150 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B9HLY2 | 1e-101 | B9HLY2_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_53.26 | 1e-149 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-68 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_53.26 |