PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_53.164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 135aa MW: 15149 Da PI: 7.5053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.1 | 9.1e-29 | 26 | 105 | 1 | 79 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratk 79 l+pGfrFhPtdeelv++yLk+kv +k++++ ++i evdiyk+ePw+L +++k++++ewyfF+ dkky +g r nrat evm.model.supercontig_53.164 26 LAPGFRFHPTDEELVSYYLKRKVLNKPVRF-NAIGEVDIYKHEPWELAdySRLKTRDQEWYFFIALDKKYGNGARMNRATG 105 579************************999.89**************8544899999*********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-30 | 17 | 105 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.978 | 26 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-13 | 28 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 135 aa Download sequence Send to blast |
MGRDTLALTP AAVKPPSNTA AAGTALAPGF RFHPTDEELV SYYLKRKVLN KPVRFNAIGE 60 VDIYKHEPWE LADYSRLKTR DQEWYFFIAL DKKYGNGARM NRATGQRLLE GNRQGQGNPS 120 GFPADWDEED PCFP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-21 | 20 | 106 | 9 | 93 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_53.164 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897911.1 | 1e-70 | LOW QUALITY PROTEIN: NAC domain-containing protein 78-like | ||||
Swissprot | Q9SQX9 | 3e-52 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A178VJ71 | 7e-50 | A0A178VJ71_ARATH; NAC050 | ||||
TrEMBL | A0A178VL85 | 7e-50 | A0A178VL85_ARATH; NAC050 | ||||
STRING | evm.model.supercontig_53.164 | 2e-96 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-54 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_53.164 |
Publications ? help Back to Top | |||
---|---|---|---|
|