PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_53.116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 449aa MW: 50846.6 Da PI: 4.5899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.9 | 2.4e-33 | 71 | 209 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+P+d e++++ L+k e+ + ++++ +ke +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+ evm.model.supercontig_53.116 71 LPRGVKFDPSDPEIIWHLLTKVEEDLEphpfIDEFIPtVKEDdGICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKR 150 799************88777766666676553333333555446**********.677888899***************** PP NAM 76 ratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+++ + +W++tg++k+v+ +ge++g+kk++v+y ++r k+ekt+Wvmh+y+l evm.model.supercontig_53.116 151 RKIHgdvsgDVRWHKTGRTKPVVL-DGEQKGCKKIMVLYmsSARGGKAEKTNWVMHQYHL 209 *85545544778************.999***********5445667788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-38 | 56 | 228 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.84 | 71 | 228 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 72 | 209 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MKCFRSVFYD AGQSVLPTWL VDSNRIATKI KSASGSSDPQ RVTWKSNPTR ACPNCQHIID 60 NSDVVKEWPG LPRGVKFDPS DPEIIWHLLT KVEEDLEPHP FIDEFIPTVK EDDGICYTHP 120 QNLPGVKQDG SVSHFFHRAI KAYNTGTRKR RKIHGDVSGD VRWHKTGRTK PVVLDGEQKG 180 CKKIMVLYMS SARGGKAEKT NWVMHQYHLG TQEDEKEGEY VISKIFYQQQ QPKQNDKGEL 240 DFPVTDNTTI PKVDPVTPMS VTPDPPRVER CSEFLLEQES TAIDVDIPAQ AASFKHPETD 300 CIEEEVQPDS ERPSYTNQLN RENQINQMAN DNEDRTDEEP KWWDSESQYL LDSQQLVEGL 360 SLCDEFLQSQ SPNREENINE GGLKGKLCLS DYAQLGAEDL KKDLEECQNL VLDPANIELD 420 TPPEFHLSQL EFGSQESFIA WGGGKIID* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_53.116 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897921.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Refseq | XP_021897922.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A288W415 | 0.0 | A0A288W415_CARPA; NAC8 protein | ||||
STRING | evm.model.supercontig_53.116 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 | Representative plant | OGRP8264 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_53.116 |