PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_52.33

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GRAS

Protein Properties

Length: 353aa MW: 39221.6 Da PI: 6.1785

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_52.33	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	45.4	1.4e-14	155	250	2	95
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs..elykalppsetseknsseelaal 81 +lL++c eav+ +d++ a+alL++l+ a g+++qR+a++f+++La rla+ ++ ++ a p+ + ++ s+++ a+ evm.model.supercontig_52.33 155 LQLLIACTEAVACRDKSYASALLSELRADALVFGSSFQRVASCFVQGLADRLAQVQPlgTIGFAAPVMNIMDNASDKKEEAF 236 699************************************************9444214455557777777779999 PP GRAS 82 klfsevsPilkfsh 95 +l +e++P ++f evm.model.supercontig_52.33 237 RLVYEICPHIQFDA 250 *********975 PP
2	GRAS	101.2	1.5e-31	249	351	272	374
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrv 351 +a lp+ + r+k+E++++ +ei+n+v+ceg +r erhe+l +Wr+r+++aGF+++p++ +++qak l++ + +gy++ evm.model.supercontig_52.33 249 DAMLPKYDTRRAKMEQFYFVEEIKNIVSCEGPARMERHEKLDQWRRRMSRAGFQAAPIK--MVAQAKQWLQENYkvCEGYTI 328 67899999***********************************************97..67789888887766889 PP GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374 ee+g+lvlgWk++p+v++S+W+ evm.model.supercontig_52.33 329 VEEKGCLVLGWKSKPIVAASCWK 351 ********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.124	128	352	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-29	249	351	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAYCSLSKDE NRVDHEVSGL ELTLSVMASY PHPYIPLLDA NFSTCFFSLL DETRDHKRPK 60 RATSIPESIG SYSSLYRGGG SSSESIISSI SHSSSTGSPN SLSKLCFRDH IRTYTQRYLA 120 AEAVEEAAEA MTNTEEGTGS INDQEDGSAD AMKLLQLLIA CTEAVACRDK SYASALLSEL 180 RADALVFGSS FQRVASCFVQ GLADRLAQVQ PLGTIGFAAP VMNIMDNASD KKEEAFRLVY 240 EICPHIQFDA MLPKYDTRRA KMEQFYFVEE IKNIVSCEGP ARMERHEKLD QWRRRMSRAG 300 FQAAPIKMVA QAKQWLQENY KVCEGYTIVE EKGCLVLGWK SKPIVAASCW KC*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAYCSLSKDE NRVDHEVSGL ELTLSVMASY PHPYIPLLDA NFSTCFFSLL DETRDHKRPK  60
RATSIPESIG SYSSLYRGGG SSSESIISSI SHSSSTGSPN SLSKLCFRDH IRTYTQRYLA  120
AEAVEEAAEA MTNTEEGTGS INDQEDGSAD AMKLLQLLIA CTEAVACRDK SYASALLSEL  180
RADALVFGSS FQRVASCFVQ GLADRLAQVQ PLGTIGFAAP VMNIMDNASD KKEEAFRLVY  240
EICPHIQFDA MLPKYDTRRA KMEQFYFVEE IKNIVSCEGP ARMERHEKLD QWRRRMSRAG  300
FQAAPIKMVA QAKQWLQENY KVCEGYTIVE EKGCLVLGWK SKPIVAASCW KC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_52.33

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021897959.1	0.0	DELLA protein SLR1-like
TrEMBL	A0A251P952	2e-81	A0A251P952_PRUPE; Uncharacterized protein
TrEMBL	A0A2N9I9H6	4e-83	A0A2N9I9H6_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_52.33	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	3e-23	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_52.33