PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 353aa    MW: 39221.6 Da    PI: 6.1785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.41.4e-14155250295
                         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs..elykalppsetseknsseelaal 81 
                                   +lL++c eav+ +d++ a+alL++l+  a   g+++qR+a++f+++La rla+ ++  ++  a p+ +  ++ s+++  a+
  evm.model.supercontig_52.33 155 LQLLIACTEAVACRDKSYASALLSELRADALVFGSSFQRVASCFVQGLADRLAQVQPlgTIGFAAPVMNIMDNASDKKEEAF 236
                                  699**************************************************9444214455557777777779999**** PP

                         GRAS  82 klfsevsPilkfsh 95 
                                  +l +e++P ++f  
  evm.model.supercontig_52.33 237 RLVYEICPHIQFDA 250
                                  ***********975 PP
2GRAS101.21.5e-31249351272374
                         GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrv 351
                                  +a lp+ +  r+k+E++++ +ei+n+v+ceg +r erhe+l +Wr+r+++aGF+++p++  +++qak  l++ +   +gy++
  evm.model.supercontig_52.33 249 DAMLPKYDTRRAKMEQFYFVEEIKNIVSCEGPARMERHEKLDQWRRRMSRAGFQAAPIK--MVAQAKQWLQENYkvCEGYTI 328
                                  67899999*************************************************97..67789888887766889**** PP

                         GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                                   ee+g+lvlgWk++p+v++S+W+
  evm.model.supercontig_52.33 329 VEEKGCLVLGWKSKPIVAASCWK 351
                                  **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.124128352IPR005202Transcription factor GRAS
PfamPF035145.1E-29249351IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAYCSLSKDE NRVDHEVSGL ELTLSVMASY PHPYIPLLDA NFSTCFFSLL DETRDHKRPK  60
RATSIPESIG SYSSLYRGGG SSSESIISSI SHSSSTGSPN SLSKLCFRDH IRTYTQRYLA  120
AEAVEEAAEA MTNTEEGTGS INDQEDGSAD AMKLLQLLIA CTEAVACRDK SYASALLSEL  180
RADALVFGSS FQRVASCFVQ GLADRLAQVQ PLGTIGFAAP VMNIMDNASD KKEEAFRLVY  240
EICPHIQFDA MLPKYDTRRA KMEQFYFVEE IKNIVSCEGP ARMERHEKLD QWRRRMSRAG  300
FQAAPIKMVA QAKQWLQENY KVCEGYTIVE EKGCLVLGWK SKPIVAASCW KC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897959.10.0DELLA protein SLR1-like
TrEMBLA0A251P9522e-81A0A251P952_PRUPE; Uncharacterized protein
TrEMBLA0A2N9I9H64e-83A0A2N9I9H6_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_52.330.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-23scarecrow-like 3