PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.117
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 439aa    MW: 48001.2 Da    PI: 9.4336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.117genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056789123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C+k F r  nL+ H r H
  evm.model.supercontig_52.117 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                  89*******************88 PP
2zf-C2H212.40.00048143165123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k +  +s+ k H +t+
  evm.model.supercontig_52.117 143 WKCEKCSKIYAVQSDWKAHSKTC 165
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-66689No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PfamPF121716.8E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355260108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-6138163No hitNo description
SMARTSM00355170143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MFPALMSNST SLSEEGTSVG LNLNPNPVVS TICAQKIKKK RSLPGNPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNS KEIKKRAYVC PEPTCVHHHP  120
SRALGDLTGI KKHYCRKHGE KKWKCEKCSK IYAVQSDWKA HSKTCGTREY RCDCGTLFSR  180
KDSFITHRAF CDALAEESAR LSANPTTTTT NPNSSSALFT YPSHISLSPW DPPQNPNPNP  240
VKLESLPFHI PPPPSLPFFQ PTTNPAPLIS SPFPLLQPTS SAALSATALL QKAATVGATA  300
TTHQPSSHHV LTQPQHGQLN SRMSGVAEFG HVDSLSDISP EYQLSGFSSG NLATWHKSDR  360
LTRDFLGLRG PQHEIKGNSG NVNVSISARE LLTYAGGAHQ FPLPAYHRDQ STSSFLRPQG  420
LGFAEPAAAA SSQAWEHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-37139203367Zinc finger protein JACKDAW
5b3h_F7e-37139203367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898076.10.0protein indeterminate-domain 12
SwissprotO227591e-133IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A061DRD11e-171A0A061DRD1_THECC; Indeterminate(ID)-domain 12
TrEMBLB9GSI61e-171B9GSI6_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_52.1170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]