PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_51.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25506.2 Da PI: 6.9607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a+kkl+g evm.model.supercontig_51.23 44 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSLEAATAYDEAAKKLYG 93 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.44E-28 | 43 | 101 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-20 | 44 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 44 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-14 | 44 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.14 | 44 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-32 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MANTRRSSSS SAAAVSSGAK KPSMGRSRKG CMKGKGGPEN ALCTYRGVRQ RTWGKWVAEI 60 REPNRGTRLW LGTFNTSLEA ATAYDEAAKK LYGASAKLNL QHNHIHHHHH HHQNYFPTTF 120 SNNGNIGSDS SSSAGSSTES SVQGDQDLMM MTTNMVGAVS VDEHTRVNCS ADGFLFSSSV 180 VGEDQNMYWV PELAVENDFL ELTDIGVLMG GGGNDDHHDE LKGWNIGLQY PWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-16 | 45 | 100 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-15 | 44 | 104 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_51.23 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898140.1 | 1e-176 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A1R3IPU0 | 2e-54 | A0A1R3IPU0_COCAP; Uncharacterized protein | ||||
STRING | evm.model.supercontig_51.23 | 1e-176 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9978 | 20 | 35 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 3e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_51.23 |