PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.139
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 293aa    MW: 33355.2 Da    PI: 6.678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.139genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-152370148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd ll+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
  evm.model.supercontig_51.139 23 KGPWTAEEDVLLATYIKREGEGRWRTLPSRAGLQRCGKSCRLRWMNYL 70
                                  79********************************************97 PP
2Myb_DNA-binding45.51.7e-1476127147
                                   TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47 
                                   rgr  ++E++l+++++++lG++      +W++Ia +++ gRt++++k++w+++
  evm.model.supercontig_51.139  76 RGRIAPDEEDLIIRLHRLLGNRvikhslRWSLIAGRIP-GRTDNEIKNYWNTH 127
                                   678889********************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0931874IPR017930Myb domain
SuperFamilySSF466893.71E-2520124IPR009057Homeodomain-like
SMARTSM007173.6E-112272IPR001005SANT/Myb domain
PfamPF002499.6E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-212477IPR009057Homeodomain-like
CDDcd001674.23E-92570No hitNo description
PROSITE profilePS5129415.2675132IPR017930Myb domain
SMARTSM007171.7E-1075130IPR001005SANT/Myb domain
PfamPF002498.4E-1377127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2278133IPR009057Homeodomain-like
CDDcd001676.66E-1081128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRKPSASSSS ASITRSTPEG IKKGPWTAEE DVLLATYIKR EGEGRWRTLP SRAGLQRCGK  60
SCRLRWMNYL RPSIKRGRIA PDEEDLIIRL HRLLGNRVIK HSLRWSLIAG RIPGRTDNEI  120
KNYWNTHISK KLISQGIDPR THKPFNLNPN PDSQQNPQPN SLKLHELPTT PIPKRVHDHD  180
QDRTDCDQFY NQQMIDGVLM ENHFDDFMVD PLSSSGHGYN NDDEDNIQNC NEDSFSAFLD  240
SLITNNENSF MNLQQQQPDG IASAENTFFH ANVREPEVES TIVALLGDEK TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22231327108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898174.10.0transcription repressor MYB5-like
TrEMBLA0A061EZP24e-94A0A061EZP2_THECC; Myb domain protein 5, putative
STRINGevm.model.supercontig_51.1390.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-70myb domain protein 5