PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.73
Common NamePLE
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26428.9 Da    PI: 9.5911
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.73genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-31958150
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  evm.model.supercontig_50.73  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                                 79***********************************************8 PP
2K-box116.62.2e-38791736100
                        K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                    s++ea+++ +qqe++kL+++i+++q+++Rh+lGe L+sL++keL++Le +Lek++++iRskKnell+++ie++qk+e el
  evm.model.supercontig_50.73  79 PGSVTEANTQFYQQEATKLRRQIREIQNSNRHILGEALGSLTFKELKNLEGRLEKGISRIRSKKNELLFAEIEYMQKREIEL 160
                                  34599***************************************************************************** PP

                        K-box  88 qeenkaLrkklee 100
                                  q++n++Lr+k++e
  evm.model.supercontig_50.73 161 QNDNMYLRAKIAE 173
                                  **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.599161IPR002100Transcription factor, MADS-box
CDDcd002652.87E-44275No hitNo description
SuperFamilySSF554559.16E-33373IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2885171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MARGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVKATIERYK KACSDATNPG SVTEANTQFY QQEATKLRRQ IREIQNSNRH ILGEALGSLT  120
FKELKNLEGR LEKGISRIRS KKNELLFAEI EYMQKREIEL QNDNMYLRAK IAENERVQEQ  180
QQSNLMQGSV YESMPSQSQT YNRNFLPVNL LEPNHQYSAD DHTALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-20169169Myocyte-specific enhancer factor 2B
1tqe_R2e-20169169Myocyte-specific enhancer factor 2B
1tqe_S2e-20169169Myocyte-specific enhancer factor 2B
6c9l_A2e-20169169Myocyte-specific enhancer factor 2B
6c9l_B2e-20169169Myocyte-specific enhancer factor 2B
6c9l_C2e-20169169Myocyte-specific enhancer factor 2B
6c9l_D2e-20169169Myocyte-specific enhancer factor 2B
6c9l_E2e-20169169Myocyte-specific enhancer factor 2B
6c9l_F2e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.73
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898389.11e-168agamous-like MADS-box protein AGL1 isoform X2
SwissprotP293811e-133AGL1_ARATH; Agamous-like MADS-box protein AGL1
SwissprotQ93XH41e-133MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA6YRN81e-166A6YRN8_CARPA; C-class floral identity
STRINGevm.model.supercontig_50.731e-167(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-135MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  6. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]