PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.28
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 127aa    MW: 14077.6 Da    PI: 7.5107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.28genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-191061256
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                 +y+G+r+++ +g+++AeIrdps +g  +r +lg+f taeeAa+a+++a+ +++g+
  evm.model.supercontig_50.28 10 RYRGIRRRP-WGKYAAEIRDPSRQG--ARLWLGTFNTAEEAARAYDRAAFAFRGH 61
                                 6********.**********96543..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-29969No hitNo description
SuperFamilySSF541711.77E-231069IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-311070IPR001471AP2/ERF domain
PfamPF008471.2E-131061IPR001471AP2/ERF domain
SMARTSM003801.8E-361074IPR001471AP2/ERF domain
PROSITE profilePS5103224.791068IPR001471AP2/ERF domain
PRINTSPR003671.8E-111122IPR001471AP2/ERF domain
PRINTSPR003671.8E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEDSGKKEAR YRGIRRRPWG KYAAEIRDPS RQGARLWLGT FNTAEEAARA YDRAAFAFRG  60
HLAILNFPNE YQHQTIPGSS IPTRANSSSS SSGQQPACSK SEGGNEVIEL EYLDDKLLQE  120
LLESSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-3251179114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.28
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898446.14e-89ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A371E6D21e-47A0A371E6D2_MUCPR; Ethylene-responsive transcription factor ERF098 (Fragment)
STRINGevm.model.supercontig_50.282e-88(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-31ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]