PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 265aa    MW: 30398.9 Da    PI: 7.0624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT+eEd++l+++++++G  +W++ ++  g+ R++k+c++rw +yl
  evm.model.supercontig_50.19 14 KGPWTPEEDQILINYIRLYGHSNWRALPKQAGLLRCGKSCRLRWTNYL 61
                                 79******************************99************97 PP
2Myb_DNA-binding52.98.6e-1767112148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  evm.model.supercontig_50.19  67 RGNFTREEEDTIIELHQRLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                  89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.448961IPR017930Myb domain
SuperFamilySSF466896.74E-3110108IPR009057Homeodomain-like
SMARTSM007178.8E-151363IPR001005SANT/Myb domain
PfamPF002493.9E-161461IPR001005SANT/Myb domain
CDDcd001671.44E-111661No hitNo description
PROSITE profilePS5129425.15762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2765117IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002499.0E-1667112IPR001005SANT/Myb domain
CDDcd001671.82E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQILINYIR LYGHSNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TREEEDTIIE LHQRLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLNQTH  120
SNYHSHKPSS SLSTFNKQDK IGTKRKDEDD RRQQSTISVV IPDYVYSPQQ SNSDDISTLT  180
TTTTNTSTSD DDNTKLDDSF WSEVLSADHS TMAIDHGLND QLHLSSSPSP AVYFDNSMTP  240
LYDNMDFWFN LLTRPGELTD LLEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.19
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898475.10.0transcription factor MYB14-like
SwissprotQ9SJX89e-88MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0B0PAB43e-99A0A0B0PAB4_GOSAR; Myb-related Myb4
TrEMBLA0A2P5VNP53e-99A0A2P5VNP5_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_50.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-82myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]