PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_50.154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 87aa MW: 9772.22 Da PI: 5.7154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41 | 5.4e-13 | 1 | 43 | 58 | 100 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+sl +eA++r++dPvyG+vg+i+ lq+q+++++++la++++e evm.model.supercontig_50.154 1 MDSLNFEAQCRIEDPVYGCVGIISLLQKQIQKAETQLAKMQAE 43 79************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.485 | 1 | 44 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-11 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MDSLNFEAQC RIEDPVYGCV GIISLLQKQI QKAETQLAKM QAEIAVYSSY FAHFDNFSPI 60 PFSIINTSKL TYWLTQAGFR SCLNNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_50.154 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910100.1 | 6e-21 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 5e-17 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1R3K629 | 8e-17 | A0A1R3K629_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_50.154 | 1e-58 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-19 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_50.154 |