PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.72
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 596aa    MW: 66893.9 Da    PI: 6.4734
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.72genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.7e-30136221187
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                                 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f
  evm.model.supercontig_5.72 136 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFF 216
                                 8*************************************999*****************************98..55667**** PP

                    trihelix  83 dqlea 87 
                                 +qlea
  evm.model.supercontig_5.72 217 RQLEA 221
                                 ***85 PP
2trihelix65.41.2e-20435511277
                    trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkry.kkikegekkrtsesss 77 
                                 W+++e+ +Lie++ +m++r+++ g++++ lWee+s+km+  g+ersp +Ck+kw+ +n++   k+ke +kkr+++ s+
  evm.model.supercontig_5.72 435 WPESEIAKLIELKASMDSRFEQsGCSEEILWEEISAKMACLGYERSPLMCKDKWDTINNYLtLKTKEYNKKRKEN-SR 511
                                 ********************9748***********************************9845888888887544.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.085133196IPR001005SANT/Myb domain
PROSITE profilePS500906.98135194IPR017877Myb-like domain
CDDcd122032.55E-20136201No hitNo description
PfamPF138373.3E-20136222No hitNo description
SMARTSM007170.0015431494IPR001005SANT/Myb domain
PfamPF138371.4E-13433507No hitNo description
PROSITE profilePS500906.69434492IPR017877Myb-like domain
CDDcd122031.05E-22435506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDDHHHHHHH QYAISDLRHL MNGRPSTHFS TSVIQQPAST AEMYRNLAQV PAQQHHQYEM  60
MMVGGGGGGG RQVGDFMARG LHEFCADTAT TSAAAAASVS AAAAAATVGI NAATPSFSGL  120
DADGGSFGGD IGGTGRWPRQ ETLTLLEIRS RLDPKFKEAN QKGPLWDEVS RIMSEEHGYQ  180
RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGESSNSV SVPETHYLGT  240
SLRYQGATNT NPHATQDPFL HSQKLCDSLS LSNNTSEFDT SSSDGAGGLM DNDSTEKRRK  300
RRGGRSWKTK IKEFIDLQMR KLMERQEVWL DKLTKTLEQK EQEKILREEE WRRQEAERID  360
REHKFWAKER ARLEARDAAM IEALQNLTGK QFSKTPSPEE LMGTDQIQNS NENQNENGSH  420
ETINTTTTTG NADSWPESEI AKLIELKASM DSRFEQSGCS EEILWEEISA KMACLGYERS  480
PLMCKDKWDT INNYLTLKTK EYNKKRKENS RTSDGGCGYF PSCESLYNQP NAFCEINEQG  540
PETIRLQTTD GSSPGSNSNA AGNSVGDSCF RFLMADGENL WENYGLKLSK GDENQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.72
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908749.10.0trihelix transcription factor PTL
RefseqXP_021908750.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-159PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A061ESW50.0A0A061ESW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGevm.model.supercontig_5.720.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-134Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]