PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_5.71 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 20928.2 Da PI: 4.8629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g evm.model.supercontig_5.71 31 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAIAYDVAALALKG 81 68*****888.8*********94....478***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 31 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-30 | 32 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-21 | 32 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.38E-31 | 33 | 91 | No hit | No description |
PRINTS | PR00367 | 5.9E-11 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQYYSKPTNK ASSSSSGSSR SNVSSVTGRH PVYRGVRRRS SGKWVSEIRE PRKPNRIWLG 60 TFPTPEMAAI AYDVAALALK GRDAELNFPN SASSLPVPES NSPRDIQSAA ASAAAALGAA 120 NDALSANENA RNDENVTTTA ERSSMVNEFV DEDLIFDMPN LLVNMAEGML VSPPRLDIAD 180 DDAATADHDL WKFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 25 | 90 | 7 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_5.71 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908529.1 | 1e-139 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 6e-58 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2C9VCX7 | 3e-81 | A0A2C9VCX7_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_5.71 | 1e-138 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_5.71 |