PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_5.66 | ||||||||
Common Name | CBF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19827.2 Da PI: 4.8432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.6e-17 | 17 | 67 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+ ++g+Wv+e r+p +k+ r+++g+f ++e+Aa+a++ a+++l+ge evm.model.supercontig_5.66 17 PVYKGVRR--RNGKWVCETREP---NKQSRIWVGTFSSPEMAARAHDVAALALRGE 67 68****85..47******8887...336**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-13 | 17 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-23 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 18 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-16 | 18 | 77 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.34E-25 | 19 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQKRKAGRKK FQETRHPVYK GVRRRNGKWV CETREPNKQS RIWVGTFSSP EMAARAHDVA 60 ALALRGESSA SLNFPDEIRA LPRAKSSAIR DIQCAAMEAA EVFRNTGDSS SAINVHGDDD 120 QEDEGMVFLD EDEVFNMPAI LHSMAEGLIL APPSVQRECT WDDDMEDEVE LALWSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_5.66 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX047553 | 0.0 | JX047553.1 Carica papaya CBF/DREB1 transcription factor 1 (CBF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908755.1 | 1e-130 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 3e-54 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-54 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | X2C082 | 1e-128 | X2C082_CARPA; CBF/DREB1 transcription factor 1 | ||||
STRING | evm.model.supercontig_5.66 | 1e-129 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-42 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_5.66 |
Publications ? help Back to Top | |||
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