PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_5.63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRF | ||||||||
Protein Properties | Length: 397aa MW: 43256.4 Da PI: 8.2474 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82.4 | 3.9e-26 | 142 | 185 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e evm.model.supercontig_5.63 142 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 185 79***************************************987 PP | |||||||
2 | QLQ | 53.7 | 6.3e-19 | 74 | 110 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k evm.model.supercontig_5.63 74 SYFSLAQWQELELQALIYRYMLAGAAVPPELLQPIKK 110 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.957 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-13 | 75 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.686 | 142 | 186 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-22 | 143 | 185 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDLHLKQWRN QHESEQQPSA KIPKLLLDPH QQNPSASASA SLALPLFVPE QPSTKLTNLS 60 ALPDSSSRFP KMGSYFSLAQ WQELELQALI YRYMLAGAAV PPELLQPIKK SLLHSSPYFL 120 HHPLQHYAHY QPAWYWSRAA LDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS 180 RKPVEIPTPN TTAAVTPLSV AASTVSSLGA GGGGLGGSDT FKSTGPISMT LPAMVANGPS 240 FGLAGPASSA DLLHLNHSSS EFRIENKGLF EAQNEVDNRP DGHILRHFFD DWPRSLQEPD 300 NAGRNASPMS SSTCLTISSS DVSLKLSTGN ADELTTRDGE RDQLQLNWAA GWATNQMGGP 360 LAEALRSSTS NSSPTSVLHQ LPRNSATESS YVSTCV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_5.63 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908703.1 | 0.0 | growth-regulating factor 3 isoform X2 | ||||
Swissprot | Q8L8A7 | 1e-96 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A2I4DTW0 | 0.0 | A0A2I4DTW0_JUGRE; growth-regulating factor 3-like isoform X2 | ||||
STRING | evm.model.supercontig_5.63 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 4e-75 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_5.63 |
Publications ? help Back to Top | |||
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