PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_5.261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 206aa MW: 22000.4 Da PI: 7.1089 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.3 | 1.7e-35 | 36 | 164 | 6 | 89 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssas 83 +++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a ++ s+ evm.model.supercontig_5.261 36 SSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAAQVsssaG--PAPLSS- 114 6789********************************************************7777733322111..111111. PP TCP 84 nsssg................................................k 89 + + evm.model.supercontig_5.261 115 ----SpssvscrvhpvgvggaqgiftmgpppscrldlcqpvglqysttagngfR 164 ....11222344444555555555566666666666665555444444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.1E-31 | 37 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.172 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MVLNDFSSTE HNHHHNSNLN SLNESSPVVP RKSASSSSRD RHTKVNGRGR RVRMPALCAA 60 RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AQVSSSAGPA PLSSSPSSVS 120 CRVHPVGVGG AQGIFTMGPP PSCRLDLCQP VGLQYSTTAG NGFRHMPFTA LLLQPVTAAA 180 AEEDEETDDK QRQQQGVLED HHEHQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_5.261 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908705.1 | 1e-150 | transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 2e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A061ETZ0 | 3e-83 | A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative | ||||
STRING | evm.model.supercontig_5.261 | 1e-150 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-44 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_5.261 |