PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.106
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27569.1 Da    PI: 9.5242
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.106genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-1966119356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  k+ ++t+eql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  evm.model.supercontig_5.106  66 KKKRLTNEQLLSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119
                                  56779************************************************9 PP
2HD-ZIP_I/II115.92.4e-3765155191
                  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                  ekk+rl++eq+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d + +e+ +L++
  evm.model.supercontig_5.106  65 EKKKRLTNEQLLSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQEFDVICREKMKLQE 146
                                  69******************************************************************************** PP

                  HD-ZIP_I/II  83 eveeLreel 91 
                                  ev +Lr  l
  evm.model.supercontig_5.106 147 EVMKLRGIL 155
                                  *****9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-1961123IPR009057Homeodomain-like
PROSITE profilePS5007117.45961121IPR001356Homeobox domain
SMARTSM003891.2E-1664125IPR001356Homeobox domain
PfamPF000464.5E-1666119IPR001356Homeobox domain
CDDcd000862.24E-1566122No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2071120IPR009057Homeodomain-like
PRINTSPR000314.2E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000314.2E-5101117IPR000047Helix-turn-helix motif
PfamPF021836.9E-7121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDHWNGNLRS FLSRPEPSFN FLYSYNYDQY PGTEIKHPGG AIGGETAHGV VPAGTEKNRY  60
GMNQEKKKRL TNEQLLSLER SFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA  120
KQLERLYDSL KQEFDVICRE KMKLQEEVMK LRGILREEAR KKQVSAGYTE TSGEETVESA  180
SVGSGSGKKA RRIKQQIQMG DDHHCNYSLF NIDEYNPLPV SSSYNNNNWP PPPLPSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908541.11e-179homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR03e-58ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1R3KHF91e-103A0A1R3KHF9_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_5.1061e-178(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-54homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]