PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.94
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 448aa    MW: 47674.3 Da    PI: 6.513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.94genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20223272255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  evm.model.supercontig_49.94 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272
                                  7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-22223281IPR016177DNA-binding domain
PROSITE profilePS5103225.712223280IPR001471AP2/ERF domain
PfamPF008474.0E-14223272IPR001471AP2/ERF domain
SMARTSM003805.5E-38223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33223281IPR001471AP2/ERF domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000183.36E-15231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCLLKVANQR RSNEYVSFPA PTDGGAGESE EQGATTYTQG LESSHVVAPT HFPFRIHEAE  60
EAITSAPMFM AYSSTEMSEM VSALTHVVSG QQSFVGYGGG GGCSVSSISS SSPSVVYSPS  120
GYSSSGSPSP SGSGLWIGQK RGREEEAAPP PPQLESSAPR VYRGGPFVHH DFTVSHADSS  180
SSGATEESAN TVTQAMGTTA PPLTPSSTEA ALSYEETGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVSLVPTQI QNFPASRTPI  300
SGSLTTHFAP QASPSTPMPS IFQSQGFQGS AANILGDYWQ YTQFLQSSGD FHLQPTQQPP  360
HEATSLLEQN LQRPQMSSVQ PSLLSSSLSS SIGGSSPSPS SASYPLLFSQ QRQMGTFRPP  420
GNQTQASGSD FPMPPWSGSS HYPSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23222283163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.94
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898663.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2K2AJ343e-96A0A2K2AJ34_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_49.940.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-17ethylene response factor 110