PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_49.71 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 197aa MW: 22935.8 Da PI: 7.1947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++++G g+W+ a++ g++Rt+k+c++rw++yl evm.model.supercontig_49.71 18 RGPWTLEEDTVLAHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ evm.model.supercontig_49.71 71 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 114 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.545 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-31 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.03E-11 | 20 | 65 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 33 | 42 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 24.146 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 73 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.98E-12 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MMRTRTVANE EETSELRRGP WTLEEDTVLA HYIARHGEGR WNMLAKCAGL KRTGKSCRLR 60 WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAQHL PGRTDNEIKN YWRTRQRSTT 120 PHLYSNTQQT HIPNHANYSL DNDMAAYVAS ISSAVLPNYY ESFPPPDCQI LDADWPSSND 180 VADVLRDMDD IWYFME* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-25 | 15 | 117 | 1 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 15 | 117 | 24 | 125 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_49.71 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898606.1 | 2e-81 | transcription factor MYB62-like | ||||
Swissprot | Q9C9G7 | 4e-63 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A1Q3BER3 | 2e-69 | A0A1Q3BER3_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | evm.model.supercontig_49.71 | 1e-146 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-65 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_49.71 |
Publications ? help Back to Top | |||
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