PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.157
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 763aa    MW: 83900 Da    PI: 6.5085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.157genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.78.6e-1034057612374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   +++L+++Ae +++g+  la+ +Larl+++ sp g+p+qR+a yf+eAL+  ++       ++ ++ + s+++ + ++ a+k
  evm.model.supercontig_49.157 405 IDQLFKAAELIETGNPVLAHGILARLNHQLSPVGKPFQRAACYFKEALQLLIHM------NTANSPALSSYSLIFKIGAYK 479
                                   689**************************************************8......777778888899********* PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                    fse+sP+++f+++t+Nqa+lea+eg +++HiiDfdi++G+QW++L+q+L  R++g+psl+iT+++sp+++++ el  t+e
  evm.model.supercontig_49.157 480 SFSEISPVVQFANFTCNQALLEAFEGFDKIHIIDFDIGYGGQWASLMQELVLRNGGAPSLKITAFASPSAHEELELGFTQE 560
                                   ********************************************************************************* PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledlelee....LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                   +L++fA+e+++ f++++l   rle+l++ +    L+v++gE +aVnl ++ +  +  + s     + vL+++k+l Pk++v
  evm.model.supercontig_49.157 561 NLKRFATEINMAFDIEIL---RLESLTPASwplpLHVSEGEIIAVNLPIASFCNY--PSS----LPLVLRFIKHLPPKIMV 632
                                   *****************9...55555544322228*************9666555..444....455************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                     ++ +d+++ +F +++++al+ y+ l++sl+a    + ++ +k+Er+l+++ i+++v  +++      e+  +Wr+ + +
  evm.model.supercontig_49.157 633 TLDRGCDRTDVPFPHHIIHALQSYWGLLESLDAV-NMNLDALQKIERFLVQPGIEKIVLGRHRC----LERTPSWRSLFIQ 708
                                   *******************************776.4567999*****************99998....89999******** PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +GF+p+++s+++++qa++l+++++ +g+++e++++slvl+W++++L+s+SaWr
  evm.model.supercontig_49.157 709 SGFSPLTFSNFTESQAECLVQRTPIRGFHIEKKQASLVLCWQRKELISASAWR 761
                                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.77378741IPR005202Transcription factor GRAS
PfamPF035143.0E-100405761IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MLHASRAENK RKTQYYNKDL RRRRKEEEEE ENSTKLAKEK QQGKRLYQKW MKAMPLPFEE  60
FQGKGVLDFS SSSSSSCSDS SLLPHHTQQL QHNWQNNKEE GSCYVGSTEP TSVLDSGRSP  120
SPLTSSSTLS SSHGGGGSGG ASTDTTAVAG SVSGNPSVDA GTEKCGLGME DWESVLSGSP  180
SQEQSILRFI MGDIEDPSVG LNKILQPASG SQDLEFNAGF GVVDQGVIGF EAPLSCTSNL  240
ATNIDTSLSC STLPVGNLDV QNQSAARFAS ISTSNSVLSS SISNLLPVSL PQSVFQQPIE  300
TLDEKPQIFN SQMLLNQNQA HFTQNPAMFL PLSYAQLQEH YPLSPPPPKR LHSASIGSNY  360
HHLAKGSFPD SGQLQLLQQR PTTATAKPRM LSDELASQQL QQAIIDQLFK AAELIETGNP  420
VLAHGILARL NHQLSPVGKP FQRAACYFKE ALQLLIHMNT ANSPALSSYS LIFKIGAYKS  480
FSEISPVVQF ANFTCNQALL EAFEGFDKIH IIDFDIGYGG QWASLMQELV LRNGGAPSLK  540
ITAFASPSAH EELELGFTQE NLKRFATEIN MAFDIEILRL ESLTPASWPL PLHVSEGEII  600
AVNLPIASFC NYPSSLPLVL RFIKHLPPKI MVTLDRGCDR TDVPFPHHII HALQSYWGLL  660
ESLDAVNMNL DALQKIERFL VQPGIEKIVL GRHRCLERTP SWRSLFIQSG FSPLTFSNFT  720
ESQAECLVQR TPIRGFHIEK KQASLVLCWQ RKELISASAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3141976118375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1924KRKTQYYNKDLRRRRK
22025RRRRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.157
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898578.10.0scarecrow-like protein 6
SwissprotO813161e-163SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A061DW610.0A0A061DW61_THECC; GRAS family transcription factor
STRINGevm.model.supercontig_49.1570.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-164GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]