PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.122
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARF
Protein Properties Length: 604aa    MW: 66220.7 Da    PI: 6.6689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.122genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.95.4e-25123224199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d +g +We+++iyr++++r++lt+GW++Fv+ ++L
  evm.model.supercontig_49.122 123 FAKILTPSDANNGGGFSVPRFCADSIfpvlnyqAEPPVQ--TLSVTDVHGAVWEFRHIYRGTPRRHLLTTGWSKFVNHKKL 201
                                   89*********************999****985444444..9*************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD+vvF+  ++s+++++++v+r+
  evm.model.supercontig_49.122 202 IAGDSVVFM--KSSTGKMFIGVRRA 224
                                   *********..669999*****996 PP
2Auxin_resp92.47.7e-31279362183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa++a+ + +FevvY+Pra++s+F+vk+e ve+al+v + +GmR+kma+etedss+ ++ +Gtv++ +  +   W++S+Wr
  evm.model.supercontig_49.122 279 AAERAALGRPFEVVYYPRAGWSDFIVKAEVVEAALSVFWVPGMRVKMAMETEDSSRLTWfQGTVSSSQVRERGPWSGSPWR 359
                                   67889999************************************************************************* PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  evm.model.supercontig_49.122 360 MLQ 362
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-28116229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-32118226IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-22123224IPR003340B3 DNA binding domain
CDDcd100171.32E-19123223No hitNo description
SMARTSM010195.3E-18123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478123225IPR003340B3 DNA binding domain
PfamPF065074.0E-27279362IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MPPSLPPGDL RLVDPRIWRA CAGASVQIPL LRSRVYYFPQ GHLEQSCSSP ASILSPLALS  60
KPLIPCIIAA VHFFADPVTD EVFTRLLLHP VSPSQLSAHD SSANQQQQLG GRYDDEDDKI  120
VAFAKILTPS DANNGGGFSV PRFCADSIFP VLNYQAEPPV QTLSVTDVHG AVWEFRHIYR  180
GTPRRHLLTT GWSKFVNHKK LIAGDSVVFM KSSTGKMFIG VRRAVRFGNG SCDYARWRNQ  240
IGGGVDRVTG EETEGEGIGR EGFARSGRGR LTPEAVAEAA ERAALGRPFE VVYYPRAGWS  300
DFIVKAEVVE AALSVFWVPG MRVKMAMETE DSSRLTWFQG TVSSSQVRER GPWSGSPWRM  360
LQITWDEPEI LQSAKRVSPW QVEFLAPTPP LQTTFPPAKK LKFSQNSGFV SEGDSETFFP  420
TAGLNNSTMG QLKPSLLSYK TFPAGMQGAR QNNFGFFSLN NFMNENSSQT CTDNFFSNNM  480
VAKLKRVSTE LNIGSPQSDN LSPDSQSSFH SFVINSVGNR GCNSTKVGIS SFQLFGKVIH  540
MEEPIESGFD GVGCIEDDNT RGCSETGGVS NLVDLSLTYP YMELLDRLDA QCQRASAVEA  600
CSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-601738523355Auxin response factor 1
4ldw_A7e-601738523355Auxin response factor 1
4ldw_B7e-601738523355Auxin response factor 1
4ldx_A7e-601738523355Auxin response factor 1
4ldx_B7e-601738523355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898555.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGevm.model.supercontig_49.1220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]