PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 38675.8 Da PI: 10.1751 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 162 | 211 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g evm.model.supercontig_481.1 162 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 211 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 162 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 162 | 220 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-37 | 162 | 225 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.19E-33 | 162 | 220 | No hit | No description |
PROSITE profile | PS51032 | 24.092 | 162 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-12 | 163 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-12 | 163 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-12 | 185 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MFYQLQHLKQ NIQKQENLSF HHPTQTFVSL TPLSHVWRCY NLRFHTHRYY SVVQVDRDYL 60 WPDLNRNRKS KKSSKRSEVV DLDDDFEADF QGFKDDESDI DVDEDLDDID AVFSDIKPFA 120 FSATPLPRKT TASALSNGSK PVKAVEFNGL AEKSAKRKRK NQYRGIRQRP WGKWAAEIRD 180 PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GKKAKVNFPD ESPRASPKRA VNSMKPVAKA 240 ILNSAQPNLS QNVNYFNNLG QDYYNTMVFV DEKPQMNQFA SMNSFPASGN AGVKPFVPSD 300 NTHMNCCFLP LMKMELKQWK LLKPCVVSSG ALNRRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 161 | 221 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_481.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM453703 | 0.0 | KM453703.1 Carica papaya AP2/ERF transcription factor ERF6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907851.1 | 1e-179 | ethylene-responsive transcription factor RAP2-12-like, partial | ||||
Swissprot | Q9SSA8 | 8e-51 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A0K0NLI2 | 1e-172 | A0A0K0NLI2_CARPA; AP2/ERF transcription factor ERF6 | ||||
STRING | evm.model.supercontig_481.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-46 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_481.1 |