PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_480.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 370aa    MW: 42113.6 Da    PI: 6.1165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_480.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-1697142147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  +g W + Ed ll+++v+ +G+ +Wk Ia+++  gR++k+c+ rw++ 
  evm.model.supercontig_480.4  97 KGHWRPTEDALLKELVAIYGPQNWKVIAEKLE-GRSGKSCRQRWFNQ 142
                                  689*****************************.***********996 PP
2Myb_DNA-binding57.23.8e-18149193147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+  
  evm.model.supercontig_480.4 149 RRAFTEEEEERLTEAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHVM 193
                                  678*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.55392143IPR017930Myb domain
SuperFamilySSF466891.09E-2895190IPR009057Homeodomain-like
SMARTSM007173.6E-1496145IPR001005SANT/Myb domain
PfamPF002492.8E-1597142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2598150IPR009057Homeodomain-like
CDDcd001677.88E-13100141No hitNo description
PROSITE profilePS5129425.835144198IPR017930Myb domain
SMARTSM007172.3E-15148196IPR001005SANT/Myb domain
PfamPF002491.9E-14149192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20151197IPR009057Homeodomain-like
CDDcd001672.74E-7160194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSSLSLRRKY WVVPTFSSSH QNHCGPEIEN GNGSWIFPFN ASCSTRNFEE HHNSDIDFSD  60
GYGENNQRIN LNDDHPNDQN MENGKEIDSG QSKRCAKGHW RPTEDALLKE LVAIYGPQNW  120
KVIAEKLEGR SGKSCRQRWF NQLDPEINRR AFTEEEEERL TEAHRIYGNK WAMIARLFPG  180
RTDNAVKNHW HVMMAKKNRE QSSAYRRRKM NQSVHRRMDE IPSTITDQPQ DFSLDIPRSF  240
NGGGGEALPG SGFPPQQTPF NFFSGCSSDE VMGIFRQSRV WDRPVDEPHK MYPTYNPPYM  300
TAIQQSDLEM LHSFSDCPAH QNSASEASTS VAPASGHDHD TVSPPFIDFL GVGANEEEEG  360
EKCFLKIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32971977107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_480.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907870.10.0transcription factor MYB105-like
TrEMBLA0A0B0NX301e-134A0A0B0NX30_GOSAR; Transcription factor MYB44-like protein
TrEMBLA0A1U8I9011e-134A0A1U8I901_GOSHI; transcription factor MYB86-like
TrEMBLA0A2P5XVG31e-134A0A2P5XVG3_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_480.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-65myb domain protein 105