PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_48.70

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB_related

Protein Properties

Length: 999aa MW: 111270 Da PI: 9.5834

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_48.70	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	44	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E ++++a +++G++ Wk++a+ + +R+ ++ evm.model.supercontig_48.70 44 QWTKGELARFYEAYRKYGKD-WKKVASLVR-NRSVDMV 79 6***************99.*****.98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-10	40	88	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.748	40	93	IPR017884	SANT domain
SMART	SM00717	0.0012	41	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-4	44	81	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-7	44	83	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-4	45	79	No hit	No description
SMART	SM01135	1.5E-55	531	632	IPR033471	DIRP domain
Pfam	PF06584	1.9E-32	531	631	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MAPTRKSRSV NKRFSNEISP DKSFANSSKT KQRKRKLSDK LGPQWTKGEL ARFYEAYRKY 60 GKDWKKVASL VRNRSVDMVE ALYNMNRAYL SLPDGTASVV GLIAMMTDHY NVLEGSDSER 120 ESDDAFGVPL KPQKRKRVKV QLSNSKEDNY NSQLVTSGDG CLSMLKRVQS YGTHLRATGK 180 RTPRVPVSYL HKKGDRESSI APTKLFRKSD VVANEDDARV AALALAEASQ LGDSPKVSLK 240 PYRKKEPNKT SSVGSWEKSN LHDASIHEDW VEGGRGSRKC ENGTYVRDRG SLTDIEGVGT 300 VEVLRKGKKF YGKNVKIEEI GTNNSDEEAC SGTEGLKGSS PRGKLDIDIL NVKTQQCSQV 360 RKKRSKELFF GDESSALDAL QTLADLSTLM LPVSTVESGF SLSIASFMFI WQEFLEEDKK 420 SMTKGKHNGQ ISAKSEQWKP AKTSGADLTM STTQVSAVNS VSLPAKRQRK RKMDLTRRLI 480 KKEGSSSGNI VNNQPNTNSF PQEERVLLLK EKLSRCLSCP LARRWCTFEW FYSAIDYPWF 540 AKREFVDYLT HVGLEHIPRL TRVEWGVIRS SLGKPRRFSE RFLYEEREKL EQYRDSVRKH 600 YAELRAGARE GLPTDLARPL SVGKRVIAIH PKTRELHDGK VLTVDHTKCS IMFDSSDLGV 660 EFVMDIDCMP LNPLDYVPEA LRRQNFDVDK CSLVSKEPQM NGYPNFSGSM RFPFTGQLEG 720 VGAPVNTLVK QVDTSYAIPQ AKVSETSPVS AQQTMHSQSC VTAHNQAREA DIQALSLLNR 780 ALDEKVSSAL LILQQHGSPP PTRPKPSVTS TFLGCLRSSL DDSLTSQDSG SEILKIVKGS 840 RSKASAMVDA AIKAVSSMNE GEDAFLRISE ALDDIDKGQL ASYSRVPGNR SQEQVNDSLN 900 QQNGSVSSAS EPMSVGFKLR DSDNETRILS DLITSCVSTV LMIQMCTERQ YPPTNVAQII 960 DSAVTSLQPY CPQNLPIYRE IQMCMGRIKT QILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MAPTRKSRSV NKRFSNEISP DKSFANSSKT KQRKRKLSDK LGPQWTKGEL ARFYEAYRKY  60
GKDWKKVASL VRNRSVDMVE ALYNMNRAYL SLPDGTASVV GLIAMMTDHY NVLEGSDSER  120
ESDDAFGVPL KPQKRKRVKV QLSNSKEDNY NSQLVTSGDG CLSMLKRVQS YGTHLRATGK  180
RTPRVPVSYL HKKGDRESSI APTKLFRKSD VVANEDDARV AALALAEASQ LGDSPKVSLK  240
PYRKKEPNKT SSVGSWEKSN LHDASIHEDW VEGGRGSRKC ENGTYVRDRG SLTDIEGVGT  300
VEVLRKGKKF YGKNVKIEEI GTNNSDEEAC SGTEGLKGSS PRGKLDIDIL NVKTQQCSQV  360
RKKRSKELFF GDESSALDAL QTLADLSTLM LPVSTVESGF SLSIASFMFI WQEFLEEDKK  420
SMTKGKHNGQ ISAKSEQWKP AKTSGADLTM STTQVSAVNS VSLPAKRQRK RKMDLTRRLI  480
KKEGSSSGNI VNNQPNTNSF PQEERVLLLK EKLSRCLSCP LARRWCTFEW FYSAIDYPWF  540
AKREFVDYLT HVGLEHIPRL TRVEWGVIRS SLGKPRRFSE RFLYEEREKL EQYRDSVRKH  600
YAELRAGARE GLPTDLARPL SVGKRVIAIH PKTRELHDGK VLTVDHTKCS IMFDSSDLGV  660
EFVMDIDCMP LNPLDYVPEA LRRQNFDVDK CSLVSKEPQM NGYPNFSGSM RFPFTGQLEG  720
VGAPVNTLVK QVDTSYAIPQ AKVSETSPVS AQQTMHSQSC VTAHNQAREA DIQALSLLNR  780
ALDEKVSSAL LILQQHGSPP PTRPKPSVTS TFLGCLRSSL DDSLTSQDSG SEILKIVKGS  840
RSKASAMVDA AIKAVSSMNE GEDAFLRISE ALDDIDKGQL ASYSRVPGNR SQEQVNDSLN  900
QQNGSVSSAS EPMSVGFKLR DSDNETRILS DLITSCVSTV LMIQMCTERQ YPPTNVAQII  960
DSAVTSLQPY CPQNLPIYRE IQMCMGRIKT QILALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	472	KRQRKRKM
2	467	472	QRKRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_48.70

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898881.1	0.0	protein ALWAYS EARLY 2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A2Z6P0X4	0.0	A0A2Z6P0X4_TRISU; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_48.70	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-129	DNA binding

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_48.70

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]