PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_48.162 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TALE | ||||||||
Protein Properties | Length: 335aa MW: 37855.2 Da PI: 5.0772 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.5e-09 | 260 | 293 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++e+ +L+k +gL+++q+ +WF N+R ++ evm.model.supercontig_48.162 260 WPYPTEDEKLKLSKTTGLDQKQINNWFINQRKRH 293 58*****************************885 PP | |||||||
2 | ELK | 35.9 | 1.6e-12 | 213 | 234 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +LlrKYsgyL+sL++EF+ evm.model.supercontig_48.162 213 DIKGMLLRKYSGYLSSLRKEFL 234 58*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.5E-18 | 60 | 104 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.0E-19 | 62 | 102 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.9E-25 | 113 | 164 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-23 | 117 | 163 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.7E-9 | 213 | 234 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.563 | 213 | 233 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-6 | 213 | 234 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.519 | 233 | 296 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 235 | 300 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.21E-19 | 235 | 305 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 238 | 299 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.21E-12 | 245 | 297 | No hit | No description |
Pfam | PF05920 | 8.8E-17 | 253 | 292 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 271 | 294 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEELYRVDMG TSGRMVRSGE INYGASSSDR QCLHIRSSAE EDSMLQFQAA HVHGGSRMSD 60 LVKTQIATHP RYPHLLSAYI ECQKVGAPPE MASVLEEINR DSQYHYPISS SCSNIELGAD 120 PELDQFMESY CEVLHRYKEE LAKPFDEATS FLSSIESELS NLCQGLTLPK SLDYRSDEGG 180 GSSEEEQSVG EIELGAADQS YQESSDKLLN DQDIKGMLLR KYSGYLSSLR KEFLKKRKKG 240 KLPKDARTTL LDWWNNHYRW PYPTEDEKLK LSKTTGLDQK QINNWFINQR KRHWKPSEDM 300 RYALMEGVNT GTGMAGALPI YFDTEGAGEN GNQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 237 | LRKEFLKKRK |
2 | 234 | 238 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_48.162 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898697.1 | 0.0 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 1e-100 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A2P5VVM5 | 1e-132 | A0A2P5VVM5_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_48.162 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 5e-79 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_48.162 |
Publications ? help Back to Top | |||
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