PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_48.133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 178aa MW: 19309.4 Da PI: 10.8076 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.5 | 4.2e-19 | 20 | 54 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp g+k+LCnaCG++yrkk++ evm.model.supercontig_48.133 20 CSDCKTTRTPLWRGGPAGPKSLCNACGIRYRKKRR 54 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-14 | 14 | 65 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-12 | 17 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-15 | 18 | 54 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.7E-17 | 20 | 54 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.4 | 20 | 50 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.89E-11 | 20 | 71 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 20 | 45 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDLKEKSCLS EDGIENRKCC SDCKTTRTPL WRGGPAGPKS LCNACGIRYR KKRRAMMCSG 60 NVPDKKKNRS NNSAASTAAT TNPYSTMINK RTPTGSANTL TSPQPGLTRV LKVKLKALGD 120 NFMLQTSNDS RSPSPSPSAP VPPVVVKKQR CQRRRKLKEE EQAAFLLMAL SCGSVFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_48.133 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898795.1 | 1e-127 | GATA transcription factor 23 isoform X1 | ||||
TrEMBL | A0A2N9ITW3 | 3e-48 | A0A2N9ITW3_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_48.133 | 1e-126 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16911 | 7 | 12 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 1e-19 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_48.133 |