PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 32465.2 Da PI: 8.8002 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.5e-38 | 31 | 88 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +kcprCds+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k evm.model.supercontig_464.1 31 PEPQKCPRCDSMNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGMK 88 5789**************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.6E-33 | 33 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.528 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 38 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MQQEQGAGEE QMNNQQDSRR DQTNQQPQPQ PEPQKCPRCD SMNTKFCYYN NYSLSQPRYF 60 CKTCRRYWTQ GGTLRNVPVG GGCRKGMKRA KTAGSSSSSS AGSSGETAES TPSPTIIPSN 120 PPLFPPGNLG LMIRSKDQGQ IGGNLPTASE ISTVGSYYQG SLASNLSFLP ANLQPFGSNV 180 QPQQFFQMGN PNPLYPSDHH GSLIQSSRPH DHHHHHHHQQ QQNWHHRFII NNTANNPTVD 240 SDQTRIMSIN GGRNITSPSS RSENTNTTTT TSTNPTVGSP PFNPTSQWPH DFPX |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_464.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908400.1 | 0.0 | dof zinc finger protein DOF5.6-like | ||||
STRING | evm.model.supercontig_464.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15986 | 9 | 15 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-28 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_464.1 |