PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.88
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 361aa    MW: 40513.3 Da    PI: 5.4035
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.88genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.3e-073123442254
                                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   +yp++e++++L +++gL+ +q+ +WF N+R +
  evm.model.supercontig_46.88 312 WPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 344
                                  59*****************************87 PP
2ELK30.58.1e-11265286122
                          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                  ELKh+L+++Y+++++++++E++
  evm.model.supercontig_46.88 265 ELKHELKQGYKEKIVDVREEIL 286
                                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-18100144IPR005540KNOX1
PfamPF037904.6E-16102143IPR005540KNOX1
SMARTSM012561.9E-24153209IPR005541KNOX2
PfamPF037911.4E-16161208IPR005541KNOX2
PfamPF037894.7E-7265286IPR005539ELK domain
PROSITE profilePS512139.83265285IPR005539ELK domain
SMARTSM011888.9E-4265286IPR005539ELK domain
PROSITE profilePS5007111.693285348IPR001356Homeobox domain
SMARTSM003891.2E-10287352IPR001356Homeobox domain
SuperFamilySSF466899.84E-16287349IPR009057Homeodomain-like
CDDcd000866.04E-12288348No hitNo description
Gene3DG3DSA:1.10.10.603.9E-25292349IPR009057Homeodomain-like
PfamPF059207.8E-18305344IPR008422Homeobox KN domain
PROSITE patternPS000270323346IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAYHDGEVGF NDIFADQTKH MQRLVIDQAP TPPPFSSAAG GPAWLNNAIL QQQQRHQSFV  60
HLQNDTFSAP TCSNSTENGN GDKELIDCGG DDNDNSWESA RCKAAILGHP LYGQLLSAHV  120
ACLRIATPVD QLPRIDTQLA QSQEVVAKYY VAGDGRLDDD KDQLDQFMTH YILLLCSFKD  180
QLQQHVRVHA MEAVMACWDL EQSLQSLTGV PPGEGTGATM SDDDEHVDSD ANLFEGSVDG  240
LDTMGFGPLV PTESERSLME RVREELKHEL KQGYKEKIVD VREEILRKRR AGKLPGDTTS  300
LLKAWWQSHS KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWHSTS SSALKSKRKW  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.88
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899240.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-158KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1Q3C1981e-176A0A1Q3C198_CEPFO; ELK domain-containing protein/KNOX1 domain-containing protein/KNOX2 domain-containing protein/Homeobox_KN domain-containing protein
STRINGevm.model.supercontig_46.880.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-155KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]