PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_46.140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | RAV | ||||||||
Protein Properties | Length: 335aa MW: 38639.5 Da PI: 5.6908 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.7 | 7.7e-10 | 47 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG + +g W A+I+ ++r++lg+f ++ eAa a++ a++kl+ evm.model.supercontig_46.140 47 KFKGLVPQP-NGHWGAQIYIN-----YQRIWLGTFKSETEAAMAYDSAALKLRT 94 566665455.799****9993.....4**********99************996 PP | |||||||
2 | B3 | 88.7 | 4.7e-28 | 169 | 260 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f k+ltpsdv+k++rlv+pkkfa ++ +g+ ++++l+++d++ r+W+++++y+ +s++yv+t+GW++Fvk+ evm.model.supercontig_46.140 169 FHKELTPSDVSKLNRLVIPKKFAVKNfpnisgnayyNGN-LSDIQLIFYDRDMRVWKFRYCYWTSSESYVFTRGWNQFVKD 248 89*************************999988887433.48899************************************ PP HT--TT-EEEEE CS B3 72 ngLkegDfvvFk 83 ++Lk+g++v+F+ evm.model.supercontig_46.140 249 KQLKAGEIVTFY 260 ***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.55E-14 | 46 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.93E-21 | 46 | 102 | No hit | No description |
SMART | SM00380 | 1.4E-17 | 47 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 47 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-5 | 47 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 47 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-32 | 165 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.13E-26 | 167 | 260 | No hit | No description |
SuperFamily | SSF101936 | 5.62E-28 | 167 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.098 | 169 | 282 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-23 | 169 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-25 | 169 | 260 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEEEMQSVIS VDERNMVEEN VVFEYSDSNS INPSMPSNKC TKHGWSKFKG LVPQPNGHWG 60 AQIYINYQRI WLGTFKSETE AAMAYDSAAL KLRTKDSALN FELTSLSVKE LTFQGFYTNE 120 EVINMIRHGT YKFNFDCFLR TCAQQEDGGM SHSLGSLGGD EGTMCKKLFH KELTPSDVSK 180 LNRLVIPKKF AVKNFPNISG NAYYNGNLSD IQLIFYDRDM RVWKFRYCYW TSSESYVFTR 240 GWNQFVKDKQ LKAGEIVTFY ECTPSKKTNE EASNNFWVID VGDDLSYDMD FQVHLRHGKF 300 NYDKVEEEFA GDEVNQPVRN GDGKMFKLFG VWIM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-27 | 165 | 259 | 10 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_46.140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899217.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899218.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899219.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899220.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899221.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899222.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_021899223.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 2e-79 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
STRING | evm.model.supercontig_46.140 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 4e-79 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_46.140 |