PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.117
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 642aa    MW: 70042.1 Da    PI: 5.5391
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.117genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.6e-29212265155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  evm.model.supercontig_46.117 212 KPRVVWSVELHRKFVAAVNQL-GLEKAVPKKILDLMNVDGLTRENVASHLQKYRL 265
                                   79*******************.********************************8 PP
2Response_reg85.21.9e-28261341109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   vl vdD+p+ +++l ++l+k +y ev++a ++ eal++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ 
  evm.model.supercontig_46.117  26 VLAVDDNPTCLKILGNLLRKCQY-EVTTANQAIEALKMLRENRnkYDLVISDVNMPDMDGFNLLELVGL-EMDLPVIMLSE 104
                                   799********************.***************999889*******************87754.558******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                   h++ +++ + +  Ga d+l Kp+ +eel +
  evm.model.supercontig_46.117 105 HSDTKLVMKGIAHGACDYLLKPVRIEELKN 134
                                   ***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.9E-1671641IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.7E-4423160No hitNo description
SuperFamilySSF521722.85E-3723148IPR011006CheY-like superfamily
SMARTSM004483.7E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.95925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.77E-2927139No hitNo description
SuperFamilySSF466895.55E-20209269IPR009057Homeodomain-like
PROSITE profilePS5129412.708209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-30209270IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-25212265IPR006447Myb domain, plants
PfamPF002491.9E-7214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MTVEDRSGPL TSQDGATEGF PVGMRVLAVD DNPTCLKILG NLLRKCQYEV TTANQAIEAL  60
KMLRENRNKY DLVISDVNMP DMDGFNLLEL VGLEMDLPVI MLSEHSDTKL VMKGIAHGAC  120
DYLLKPVRIE ELKNIWQHVV RRKKLDSRDQ NKSLNQERSG FGSGDGGQGA TSAGNTDQSG  180
KVNKKRKDQS EDEEDEGEEN GQENDDPATQ KKPRVVWSVE LHRKFVAAVN QLGLEKAVPK  240
KILDLMNVDG LTRENVASHL QKYRLYLKRI SNVTTQGSIV ASLGGKDSYF RLGQVEGFGD  300
FRTLTGPGRL PNAALSSYPQ GGMLGRLNSP SGLTIRGINS SSMIQPAHPQ ILSSSNTLGK  360
LQATMLPANQ NANLFQGIPT GLEITQMPQN KSVQIGDFNR INDQTMFGVP TNFPDPRAAG  420
GSSSNISSAL SNPLLFQANS QQTHSRGAFG NQSSLNVAST NTDSFDMGVR GSSNFLDHNR  480
CNENWQAAAH LSKFPSNSLP LNHDPNTNLR ENMASTSSQF GSSPVDFSSS IPVSDSRGDL  540
QCQTGLTGNV FQNMNYSTRQ RWEEGRLDYN QGLSNSYGNA DSIMPANGIA LDQTKSQDSF  600
IQNNYDSLDD IMNAMIKRES NGPMLIDGEF GFDAYSLGSC M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-26210271364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899404.10.0two-component response regulator ARR12
SwissprotQ6K8X61e-142ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2C9ULS20.0A0A2C9ULS2_MANES; Uncharacterized protein
STRINGevm.model.supercontig_46.1170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]