PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.114
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 452aa    MW: 49185.6 Da    PI: 9.4704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.114genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.5e-12526426
                                  ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                  elCr+f+r G C+yG+rCkF H+
  evm.model.supercontig_46.114  5 ELCRNFQR-GSCQYGARCKFLHV 26
                                  8*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.108128IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6227IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9526IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5528IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-8525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPVKELCRNF QRGSCQYGAR CKFLHVTPQQ PKANGSGFGM QSSLPQQQKP NPFGFGTQSS  60
SPQQQKPNPF GFGSQSSSPQ LQKPNPFGFG VQSNSQSKGP NNFGNKPNQF KPFENKWSRF  120
SPIPGGGGPH PRQADGQPQP QSANHNCMDP ETCKRLIAED FENERPLWKL TCYSHWKSAP  180
CDIVGDISYE ELRAAAYDDG KRGLSLQSII ERERSLLSSK LVDFDNLLRN PYRGPASSVV  240
PSPSAIPENT SNVFSPASQN SFPSSVSSFG QSGPLHLQIV SPCNLFPSRI LARLMVPLGL  300
TICHLDMLTF GSSIMPNMPG ITNNGTISAQ SNQFSASAES MQNPKSSSDQ LSFGSSMSSL  360
SSNIAVGQAT RDVQSLSNLQ KVAASGDVSI WLKEKWNPGE APKHLLLLLK SYYRGGQLNH  420
MLSQPPTPSR IMSCVSTSLR CSILRCWSIL L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899408.10.0zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBLA0A1U8LZV71e-118A0A1U8LZV7_GOSHI; zinc finger CCCH domain-containing protein 16-like isoform X1
STRINGevm.model.supercontig_46.1140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.16e-69C3H family protein