PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.73
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 146aa    MW: 16722.6 Da    PI: 9.6233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.73genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-212172256
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                 +y+GVr+++ +g+++AeIrdps ng  +r +lg+f+tae+Aa+a+++a+ +l+g+
  evm.model.supercontig_44.73 21 RYRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEDAARAYDRAAFNLRGH 72
                                 6********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-372185IPR001471AP2/ERF domain
PfamPF008474.3E-152172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-322181IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-242180IPR016177DNA-binding domain
PROSITE profilePS5103225.0012179IPR001471AP2/ERF domain
PRINTSPR003671.6E-112233IPR001471AP2/ERF domain
CDDcd000181.80E-132980No hitNo description
PRINTSPR003671.6E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEGPSRRQEK EEKGKEDQGV RYRGVRRRPW GKFAAEIRDP SRNGARLWLG TFDTAEDAAR  60
AYDRAAFNLR GHLAILNFPN EYYTQVMGSP PHRPLPSSSY SGRRVEKGSS SAGQDRQVFE  120
FEYLDDKVLE ELLESEDEKK KRVRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-342112814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.73
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899581.11e-102ethylene-responsive transcription factor ERF098
SwissprotQ9LTC52e-51ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A314XLK65e-62A0A314XLK6_PRUYE; Ethylene-responsive transcription factor ERF098
STRINGevm.model.supercontig_44.731e-102(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]