PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_43.94 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HSF | ||||||||
Protein Properties | Length: 503aa MW: 54894.5 Da PI: 5.1733 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 78.2 | 1.3e-24 | 24 | 82 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d++++++++ws++gnsfvv+ efa+++LpkyFkhsnf+SFvRQLn+Y evm.model.supercontig_43.94 24 FLSKTYDMVDDSSTNSVVTWSNSGNSFVVWSVPEFARDLLPKYFKHSNFSSFVRQLNTY 82 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-26 | 14 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-22 | 19 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-25 | 20 | 177 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.6E-14 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.0E-20 | 24 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.6E-14 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.6E-14 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDSIHDSISA VNSAAANGNS VPPFLSKTYD MVDDSSTNSV VTWSNSGNSF VVWSVPEFAR 60 DLLPKYFKHS NFSSFVRQLN TYVGIASFGI MLALFCPCLE VPVIDAAVAL RKPAHGHNHQ 120 PEVHSSSVGA CVEVGKFGLE EEVERLKRDK NILMQELVRL RQQQQNTEHQ LQNVGQKVQV 180 MEQRQQQMMS FLAKAMQSPG FLNQLVQQQS ESNRRIAGGN KKRRLPRQDK ENPSGHGVGC 240 PNGQIIKYKP SINEAAKAML HQISKLNTSA RLESSVNNPA SFLINDIPSS SVLENGSSLN 300 GVSGVTLSEV PPISAQSFMS TESRFPASCI ATSVSELQSS PHMVTDSPKA GQIPEMNVHH 360 SRDEIVLPGS TQMQDNMLGT TIGASDTNFM VSEAGNPEYM DRISAVLDGT DAIETDFVSE 420 DHDLAIFLDG ATQLPGINDA FWEQFLAASP LPVDTDEISP TSSESVTMKY QLQSSENGWD 480 KIQHINHLTD KMSLLTSESQ KG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-18 | 11 | 82 | 16 | 87 | Heat shock factor protein 1 |
5d5v_B | 2e-18 | 11 | 82 | 16 | 87 | Heat shock factor protein 1 |
5d5v_D | 2e-18 | 11 | 82 | 16 | 87 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_43.94 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899646.1 | 0.0 | heat stress transcription factor A-1e | ||||
TrEMBL | A0A2P5X0P5 | 0.0 | A0A2P5X0P5_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_43.94 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 4e-98 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_43.94 |