PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_43.66
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SBP
Protein Properties Length: 389aa    MW: 42576.8 Da    PI: 8.846
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_43.66genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.9e-41181257177
                                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                  +CqvegC++dls+ak+yhr+h+vCe hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+ 
  evm.model.supercontig_43.66 181 RCQVEGCNQDLSSAKDYHRKHRVCESHSKCPKVIVAGHERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPP 257
                                  6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-33174243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.881179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-38180261IPR004333Transcription factor, SBP-box
PfamPF031107.0E-31182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEWNSKTPLQ WDWENLIMLN ATTTEIPRKL QPTEWEIDGE GGINSGSLYS SGGGGGSGGS  60
GSDLGFAALS KSSKSTSINS SSIVEVKTSK LTLEAREGFT EDFSSKKEHD KTEVTGTSPT  120
LEASVGSGEP LLGLKLGKRT YFEDVCAGNN AKAATLSVTP ASSVTPLKRS KSNSQNLQSP  180
RCQVEGCNQD LSSAKDYHRK HRVCESHSKC PKVIVAGHER RFCQQCSRFH GLSEFDEKKR  240
SCRRRLSDHN ARRRKPPPEA VQLNAARICD GKQQMSLVWN RFPFVHSRAE EKFAWEGTCG  300
SKSMQTKGFI LNPGKVGGID GQLNFHNQLP NAITTHDDAN GFLPPKTRGT TAEFLNQGMS  360
CFHNWIRTVS SLHMLSGCWV ICHQSLAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_43.66
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899703.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899704.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899705.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899706.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899707.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899708.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899709.10.0squamosa promoter-binding-like protein 2
RefseqXP_021899710.10.0squamosa promoter-binding-like protein 2
SwissprotQ9S8401e-99SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A061EC141e-156A0A061EC14_THECC; Squamosa promoter binding protein-like 2, putative isoform 1
STRINGevm.model.supercontig_43.660.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-94squamosa promoter binding protein-like 2