PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_43.48 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NF-YC | ||||||||
Protein Properties | Length: 141aa MW: 15982.4 Da PI: 9.3377 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.1 | 1.9e-13 | 10 | 91 | 17 | 97 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + +P r+k+i+k d+d++++ +ea l + +lf+ l +s e+kr+tlk d+ av+r + dfl+d p evm.model.supercontig_43.48 10 VRPGFPTPRVKRIMKLDKDINKVNSEALFLTTCCADLFLRFLVEKSAEIVAEKKRKTLKLEDLRIAVKRHRpTSDFLLDSLP 91 45679**********************99998888999999999***********************9975389*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.3E-17 | 14 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-18 | 14 | 91 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.18E-15 | 14 | 79 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MAEEENTEPV RPGFPTPRVK RIMKLDKDIN KVNSEALFLT TCCADLFLRF LVEKSAEIVA 60 EKKRKTLKLE DLRIAVKRHR PTSDFLLDSL PIPTVSMDRL VTDRAQSRPI AEKPVPAGTR 120 RIDSFFRKSE NEAPTETNDS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_43.48 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899616.1 | 2e-96 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A0D2PU79 | 1e-63 | A0A0D2PU79_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JXK1 | 1e-63 | A0A1U8JXK1_GOSHI; DNA polymerase epsilon subunit C-like | ||||
TrEMBL | A0A2P5SJG3 | 1e-63 | A0A2P5SJG3_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_43.48 | 7e-96 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 | Representative plant | OGRP9472 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-46 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_43.48 |